-- The C compiler identification is Intel 13.0.0.20121010 -- Check for working C compiler: /home/soft/intel2013/impi/4.1.0.024/intel64/bin/mpiicc -- Check for working C compiler: /home/soft/intel2013/impi/4.1.0.024/intel64/bin/mpiicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Looking for NVIDIA GPUs present in the system -- Number of NVIDIA GPUs detected: 2 -- Found CUDA: /home/soft/cuda-6.0/ (found suitable version "6.0", minimum required is "3.2") -- The CXX compiler identification is Intel 13.0.0.20121010 -- Check for working CXX compiler: /home/soft/intel2013/impi/4.1.0.024/intel64/bin/mpiicpc -- Check for working CXX compiler: /home/soft/intel2013/impi/4.1.0.024/intel64/bin/mpiicpc -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detecting best acceleration for this CPU -- Detected best acceleration for this CPU - AVX_256 -- Try OpenMP C flag = [-openmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-openmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -openmp -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_STDGNU -- Performing Test CFLAGS_STDGNU - Success -- Performing Test CFLAGS_OPT -- Performing Test CFLAGS_OPT - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_OPT -- Performing Test CXXFLAGS_OPT - Success -- Looking for include file string.h -- Looking for include file string.h - found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file limits.h -- Looking for include file limits.h - found -- Looking for include file memory.h -- Looking for include file memory.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file direct.h -- Looking for include file direct.h - not found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file stdint.h -- Looking for include file stdint.h - found -- Looking for include file stdlib.h -- Looking for include file stdlib.h - found -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file sys/stat.h ^[[B-- Looking for include file sys/stat.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file rpc/rpc.h -- Looking for include file rpc/rpc.h - found -- Looking for include files rpc/rpc.h, rpc/xdr.h -- Looking for include files rpc/rpc.h, rpc/xdr.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for sched_setaffinity -- Looking for sched_setaffinity - found -- Looking for sched_getaffinity -- Looking for sched_getaffinity - found -- Looking for rsqrt -- Looking for rsqrt - not found -- Looking for rsqrtf -- Looking for rsqrtf - not found -- Looking for sqrtf -- Looking for sqrtf - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian CMake Warning at CMakeLists.txt:464 (message): Searching for static libraries requested, so the GROMACS libraries will also be built statically (BUILD_SHARED_LIBS=OFF) -- MPI is not compatible with thread-MPI. Disabling thread-MPI. -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Setting build user/date/host/cpu information -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - __inline__ -- Checking for restrict keyword -- Checking for restrict keyword - __restrict__ -- Checking for pipe support -- Checking for isfinite -- Performing Test isfinite_compile_ok -- Performing Test isfinite_compile_ok - Success -- Checking for isfinite - yes -- Checking for _isfinite -- Performing Test _isfinite_compile_ok -- Performing Test _isfinite_compile_ok - Failed -- Checking for _isfinite - no -- Checking for _finite -- Performing Test _finite_compile_ok -- Performing Test _finite_compile_ok - Failed -- Checking for _finite - no -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test GNU_AVX_CFLAG -- Performing Test GNU_AVX_CFLAG - Success -- Performing Test GNU_AVX_CXXFLAG -- Performing Test GNU_AVX_CXXFLAG - Success -- Looking for immintrin.h -- Looking for immintrin.h - found -- Looking for x86intrin.h -- Looking for x86intrin.h - found -- Looking for intrin.h -- Looking for intrin.h - not found -- Enabling 256-bit AVX Gromacs acceleration -- Checking for gcc AVX maskload bug -- Checking for gcc AVX maskload bug - not present -- Looking for DftiCreateDescriptor -- Looking for DftiCreateDescriptor - found -- Using external FFT library - Intel MKL -- Looking for dgemm_ -- Looking for dgemm_ - found -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using default binary suffix: "_mpi" -- Using default library suffix: "_mpi" CMake Warning at tests/CMakeLists.txt:101 (message): Please set MPIEXEC. Otherwise mpirun is assumed for runnings tests. -- Configuring done -- Generating done