* installing to library ‘/grid/software/R/3.2.3/lib64/R/library’ * installing *source* package ‘MCMCpack’ ... checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether icpc accepts -g... yes checking for gcc... icc checking whether we are using the GNU C compiler... yes checking whether icc accepts -g... yes checking for icc option to accept ISO C89... none needed checking how to run the C preprocessor... icc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking for trunc... yes configure: creating ./config.status config.status: creating src/Makevars ** libs icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c HMMmultivariateGaussian.cc -o HMMmultivariateGaussian.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c HMMpanelFE.cc -o HMMpanelFE.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c HMMpanelRE.cc -o HMMpanelRE.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCSVDreg.cc -o MCMCSVDreg.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCbinaryChange.cc -o MCMCbinaryChange.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCdynamicEI.cc -o MCMCdynamicEI.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCdynamicIRT1d-b.cc -o MCMCdynamicIRT1d-b.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCdynamicIRT1d.cc -o MCMCdynamicIRT1d.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCfactanal.cc -o MCMCfactanal.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMChierBetaBinom.cc -o MCMChierBetaBinom.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMChierEI.cc -o MCMChierEI.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMChlogit.cc -o MCMChlogit.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMChpoisson.cc -o MCMChpoisson.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMChregress.cc -o MCMChregress.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCintervention.cc -o MCMCintervention.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCirt1d.cc -o MCMCirt1d.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCirtHier1d.cc -o MCMCirtHier1d.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCirtKdHet.cc -o MCMCirtKdHet.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCirtKdRob.cc -o MCMCirtKdRob.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMClogit.cc -o MCMClogit.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMClogituserprior.cc -o MCMClogituserprior.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCmetrop1R.cc -o MCMCmetrop1R.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCmixfactanal.cc -o MCMCmixfactanal.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCmnlMH.cc -o MCMCmnlMH.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCmnlslice.cc -o MCMCmnlslice.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCoprobit.cc -o MCMCoprobit.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCoprobitChange.cc -o MCMCoprobitChange.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCordfactanal.cc -o MCMCordfactanal.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCpoisson.cc -o MCMCpoisson.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCpoissonChange.cc -o MCMCpoissonChange.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCprobit.cc -o MCMCprobit.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCprobitChange.cc -o MCMCprobitChange.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCprobitres.cc -o MCMCprobitres.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCquantreg.cc -o MCMCquantreg.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCregress.cc -o MCMCregress.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCregressChange.cc -o MCMCregressChange.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCresidualBreakAnalysis.cc -o MCMCresidualBreakAnalysis.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c MCMCtobit.cc -o MCMCtobit.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c SSVSquantreg.cc -o SSVSquantreg.o icpc -I/grid/software/R/3.2.3/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/usr/local/include -E -fpic -O3 -ipo -xHost -qopenmp -I/grid/software/intel/2016/compilers_and_libraries_2016.1.150/linux/mkl/include -c lecuyer.cc -o lecuyer.o icpc -shared -L/usr/local/lib64 -o MCMCpack.so HMMmultivariateGaussian.o HMMpanelFE.o HMMpanelRE.o MCMCSVDreg.o MCMCbinaryChange.o MCMCdynamicEI.o MCMCdynamicIRT1d-b.o MCMCdynamicIRT1d.o MCMCfactanal.o MCMChierBetaBinom.o MCMChierEI.o MCMChlogit.o MCMChpoisson.o MCMChregress.o MCMCintervention.o MCMCirt1d.o MCMCirtHier1d.o MCMCirtKdHet.o MCMCirtKdRob.o MCMClogit.o MCMClogituserprior.o MCMCmetrop1R.o MCMCmixfactanal.o MCMCmnlMH.o MCMCmnlslice.o MCMCoprobit.o MCMCoprobitChange.o MCMCordfactanal.o MCMCpoisson.o MCMCpoissonChange.o MCMCprobit.o MCMCprobitChange.o MCMCprobitres.o MCMCquantreg.o MCMCregress.o MCMCregressChange.o MCMCresidualBreakAnalysis.o MCMCtobit.o SSVSquantreg.o lecuyer.o HMMmultivariateGaussian.o: file not recognized: File format not recognized make: *** [MCMCpack.so] Error 1 ERROR: compilation failed for package ‘MCMCpack’ * removing ‘/grid/software/R/3.2.3/lib64/R/library/MCMCpack’