topic Re: Intel MPI 2021.7 on cluster in Intel® MPI Library

Intel MPI 2021.7 on cluster

Frank_R_1 — Wed, 08 Mar 2023 16:34:02 GMT

Dear support,

We have an Intel cluster with following installed os and drivers
CentOS Linux release 7.9.2009 (Core)
libibverbs-utils-22.4-6.el7_9.x86_64
libibverbs-22.4-6.el7_9.x86_64

Used library is Intel MPI 2021.7

Calling on two hosts the example ./IMB-MPI1 allreduce

./mpiexec.hydra -np 32 -hosts n17,n18 -genv UCX_TLS "ud_v,sm,self" -genv FI_PROVIDER=mlx -genv I_MPI_HYDRA_DEBUG 500 -genv I_MPI_FABRICS shm:ofi ./IMB-MPI1 allreduce

we get the output:
[1678203216.872833] [n18:604 :0] select.c:434 UCX ERROR no active messages transport to <no debug data>: posix/memory - Destination is unreachable, sysv/memory - Destination is unreachable, self/memory - Destination is unreachable, sockcm/sockaddr - no am bcopy, cma/memory - no am bcopy
[1678203216.872825] [n18:605 :0] select.c:434 UCX ERROR no active messages transport to <no debug data>: posix/memory - Destination is unreachable, sysv/memory - Destination is unreachable, self/memory - Destination is unreachable, sockcm/sockaddr - no am bcopy, cma/memory - no am bcopy
[1678203216.872829] [n18:610 :0] select.c:434 UCX ERROR no active messages transport to <no debug data>: posix/memory - Destination is unreachable, sysv/memory - Destination is unreachable, self/memory - Destination is unreachable, sockcm/sockaddr - no am bcopy, cma/memory - no am bcopy
[1678203216.872891] [n18:608 :0] select.c:434 UCX ERROR no active messages transport to <no debug data>: posix/memory - Destination is unreachable, sysv/memory - Destination is unreachable, self/memory - Destination is unreachable, sockcm/sockaddr - no am bcopy, cma/memory - no am bcopy
[1678203216.872870] [n18:609 :0] select.c:434 UCX ERROR no active messages transport to <no debug data>: posix/memory - Destination is unreachable, sysv/memory - Destination is unreachable, self/memory - Destination is unreachable, sockcm/sockaddr - no am bcopy, cma/memory - no am bcopy
Abort(1615247) on node 0 (rank 0 in comm 0): Fatal error in PMPI_Init_thread: Other MPI error, error stack:
MPIR_Init_thread(176)............:
MPID_Init(1538)..................:
MPIDI_OFI_mpi_init_hook(1601)....:
insert_addr_table_roots_only(451): OFI get address vector map failed
[1678203216.872865] [n18:611 :0] select.c:434 UCX ERROR no active messages transport to <no debug data>: posix/memory - Destination is unreachable, sysv/memory - Destination is unreachable, self/memory - Destination is unreachable, sockcm/sockaddr - no am bcopy, cma/memory - no am bcopy
Abort(1615247) on node 0 (rank 0 in comm 0): Fatal error in PMPI_Init_thread: Other MPI error, error stack:
truncated...

With -genv FI_PROVIDER=tcp it works.

Running ./mpiexec.hydra -np 32 -hosts n17,n18 -genv UCX_TLS "ud_v,sm,self" -genv FI_PROVIDER=verbs -genv I_MPI_HYDRA_DEBUG 500 -genv I_MPI_FABRICS shm:ofi ./IMB-MPI1 allreduce

we get the output:
Abort(2139535) on node 0 (rank 0 in comm 0): Fatal error in PMPI_Init_thread: Other MPI error, error stack:
MPIR_Init_thread(176)........:
MPID_Init(1538)..............:
MPIDI_OFI_mpi_init_hook(1511):
open_fabric(2565)............:
find_provider(2683)..........: OFI fi_getinfo() failed (ofi_init.c:2683:find_provider:No data available)
Abort(2139535) on node 0 (rank 0 in comm 0): Fatal error in PMPI_Init_thread: Other MPI error, error stack:
MPIR_Init_thread(176)........:
MPID_Init(1538)..............:
MPIDI_OFI_mpi_init_hook(1511):
open_fabric(2565)............:
find_provider(2683)..........: OFI fi_getinfo() failed (ofi_init.c:2683:find_provider:No data available)
Abort(2139535) on node 0 (rank 0 in comm 0): Fatal error in PMPI_Init_thread: Other MPI error, error stack:
MPIR_Init_thread(176)........:
MPID_Init(1538)..............:
MPIDI_OFI_mpi_init_hook(1511):
open_fabric(2565)............:
find_provider(2683)..........: OFI fi_getinfo() failed (ofi_init.c:2683:find_provider:No data available)
truncated...

Installed packets
elfutils-default-yama-scope-0.176-5.el7.noarch
pyparsing-1.5.6-9.el7.noarch
tuned-2.11.0-12.el7_9.noarch
fontpackages-filesystem-1.44-8.el7.noarch
abrt-addon-kerneloops-2.1.11-60.el7.centos.x86_64
xml-commons-resolver-1.2-15.el7.noarch
abrt-addon-pstoreoops-2.1.11-60.el7.centos.x86_64
ucx-knem-1.8.0-1.49224.x86_64
mesa-libGLU-9.0.0-4.el7.x86_64
cal10n-0.7.7-4.el7.noarch
librdmacm-22.4-6.el7_9.x86_64
libsepol-2.5-10.el7.x86_64
libarchive-3.1.2-14.el7_7.x86_64
kbd-misc-1.15.5-16.el7_9.noarch
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iowatcher-1.0-6.el7.x86_64
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slang-2.2.4-11.el7.x86_64
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zlib-1.2.7-20.el7_9.x86_64
pinentry-0.8.1-17.el7.x86_64
libreport-plugin-rhtsupport-2.1.11-53.el7.centos.x86_64
lz4-1.8.3-1.el7.x86_64
iptables-1.4.21-35.el7.x86_64
sos-3.9-5.el7.centos.11.noarch
mesa-libgbm-18.3.4-12.el7_9.x86_64
rsyslog-8.24.0-57.el7_9.3.x86_64
libevent-2.0.21-4.el7.x86_64
alsa-firmware-1.0.28-2.el7.noarch
systemd-libs-219-78.el7_9.7.x86_64
gettext-0.19.8.1-3.el7.x86_64
bind-license-9.11.4-26.P2.el7_9.10.noarch
json-glib-1.4.2-2.el7.x86_64
libestr-0.1.9-2.el7.x86_64
copy-jdk-configs-3.3-11.el7_9.noarch
abrt-python-2.1.11-60.el7.centos.x86_64
python-lxml-3.2.1-4.el7.x86_64
gdk-pixbuf2-2.36.12-3.el7.x86_64
latencytop-common-0.5-13.el7.x86_64
procps-ng-3.3.10-28.el7.x86_64
python-configobj-4.7.2-7.el7.noarch
objectweb-asm-3.3.1-9.el7.noarch
systemd-python-219-78.el7_9.7.x86_64
newt-python-0.52.15-4.el7.x86_64
javamail-1.4.6-8.el7.noarch
blktrace-1.0.5-9.el7.x86_64
apache-commons-io-2.4-12.el7.noarch
libXpm-3.5.12-1.el7.x86_64
kbd-legacy-1.15.5-16.el7_9.noarch
logrotate-3.8.6-19.el7.x86_64
quota-4.01-19.el7.x86_64
adobe-mappings-cmap-deprecated-20171205-3.el7.noarch
librsvg2-tools-2.40.20-1.el7.x86_64
adobe-mappings-pdf-20180407-1.el7.noarch
perl-libs-5.16.3-299.el7_9.x86_64
geoipupdate-2.5.0-1.el7.x86_64
setuptool-1.19.11-8.el7.x86_64
urw-base35-nimbus-mono-ps-fonts-20170801-10.el7.noarch
glib2-2.56.1-9.el7_9.x86_64
snappy-1.1.0-3.el7.x86_64
graphviz-tcl-2.30.1-22.el7.x86_64
openssl-libs-1.0.2k-25.el7_9.x86_64
pth-2.0.7-23.el7.x86_64
perftest-4.2-2.el7.x86_64
libyaml-0.1.4-11.el7_0.x86_64
findutils-4.5.11-6.el7.x86_64
device-mapper-multipath-libs-0.4.9-136.el7_9.x86_64
NetworkManager-tui-1.18.8-2.el7_9.x86_64
rpm-build-libs-4.11.3-48.el7_9.x86_64
chrony-3.4-1.el7.x86_64
libwayland-client-1.15.0-1.el7.x86_64
libXcursor-1.1.15-1.el7.x86_64
gmp-6.0.0-15.el7.x86_64
grub2-tools-extra-2.02-0.87.0.2.el7.centos.11.x86_64
libfastjson-0.99.4-3.el7.x86_64
parted-3.1-32.el7.x86_64
perl-podlators-2.5.1-3.el7.noarch
grub2-2.02-0.87.0.2.el7.centos.11.x86_64
augeas-libs-1.4.0-10.el7.x86_64
device-mapper-1.02.170-6.el7_9.5.x86_64
fribidi-1.0.2-1.el7_7.1.x86_64
perl-threads-1.87-4.el7.x86_64
kernel-3.10.0-1160.81.1.el7.x86_64
sgpio-1.2.0.10-13.el7.x86_64
pinfo-0.6.10-9.el7.x86_64
perl-Time-Local-1.2300-2.el7.noarch
kmod-20-28.el7.x86_64
iotop-0.6-4.el7.noarch
firewalld-0.6.3-13.el7_9.noarch
bc-1.06.95-13.el7.x86_64
libassuan-2.1.0-3.el7.x86_64
gpg-pubkey-352c64e5-52ae6884
lvm2-2.02.187-6.el7_9.5.x86_64
scl-utils-20130529-19.el7.x86_64
libedit-3.0-12.20121213cvs.el7.x86_64
libquadmath-4.8.5-44.el7.x86_64
libICE-1.0.9-9.el7.x86_64
tk-8.5.13-6.el7.x86_64
rpcbind-0.2.0-49.el7.x86_64
unzip-6.0-24.el7_9.x86_64
perl-Compress-Raw-Zlib-2.061-4.el7.x86_64
iwl6000g2b-firmware-18.168.6.1-80.el7_9.noarch
dmraid-events-1.0.0.rc16-28.el7.x86_64
libwayland-cursor-1.15.0-1.el7.x86_64
iwl6000-firmware-9.221.4.1-80.el7_9.noarch
elfutils-libelf-0.176-5.el7.x86_64
ttmkfdir-3.0.9-42.el7.x86_64
libfontenc-1.1.3-3.el7.x86_64
glusterfs-libs-6.0-61.el7.x86_64
cpio-2.11-28.el7.x86_64
lksctp-tools-1.0.17-2.el7.x86_64
xz-5.2.2-2.el7_9.x86_64
fprintd-0.8.1-2.el7.x86_64
fontconfig-2.13.0-4.3.el7.x86_64
glibc-devel-2.17-326.el7_9.x86_64
at-spi2-atk-2.26.2-1.el7.x86_64
freetype-2.8-14.el7_9.1.x86_64
pkgconfig-0.27.1-4.el7.x86_64
glusterfs-fuse-6.0-61.el7.x86_64
trousers-0.3.14-2.el7.x86_64
python-configshell-1.1.26-1.el7.noarch
libpwquality-1.2.3-5.el7.x86_64
libpcap-1.5.3-13.el7_9.x86_64
libsoup-2.62.2-2.el7.x86_64
selinux-policy-3.13.1-268.el7_9.2.noarch
libverto-libevent-0.2.5-4.el7.x86_64
nss-util-3.79.0-1.el7_9.x86_64
psmisc-22.20-17.el7.x86_64
python-gobject-base-3.22.0-1.el7_4.1.x86_64
libsmbclient-4.10.16-20.el7_9.x86_64
usermode-1.111-6.el7.x86_64
pytalloc-2.1.16-1.el7.x86_64

Installed modules:
Module Size Used by
rpcsec_gss_krb5 35549 0
auth_rpcgss 59415 1 rpcsec_gss_krb5
nfsv4 592234 1
dns_resolver 13140 1 nfsv4
nfs 270197 4 nfsv4
lockd 98048 1 nfs
grace 13515 1 lockd
fscache 64980 2 nfs,nfsv4
ib_isert 50874 0
iscsi_target_mod 295703 1 ib_isert
ib_srpt 52867 0
target_core_mod 347008 3 iscsi_target_mod,ib_srpt,ib_isert
ib_srp 56980 0
scsi_transport_srp 21112 1 ib_srp
scsi_tgt 20027 1 scsi_transport_srp
rpcrdma 221211 0
rdma_ucm 26958 0
ib_iser 47950 0
ib_umad 22093 0
rdma_cm 64491 6 rpcrdma,ib_srp,ib_iser,ib_srpt,rdma_ucm,ib_isert
ib_ipoib 115195 0
iw_cm 43514 1 rdma_cm
libiscsi 57233 1 ib_iser
scsi_transport_iscsi 108101 2 ib_iser,libiscsi
ib_cm 53122 4 rdma_cm,ib_srp,ib_srpt,ib_ipoib
sunrpc 366617 12 nfs,rpcsec_gss_krb5,auth_rpcgss,lockd,nfsv4,rpcrdma
mlx4_ib 183097 0
ib_uverbs 106304 2 mlx4_ib,rdma_ucm
ib_core 263545 13 rdma_cm,ib_cm,iw_cm,rpcrdma,mlx4_ib,ib_srp,ib_iser,ib_srpt,ib_umad,ib_uverbs,rdma_ucm,ib_ipoib,ib_isert
dm_mirror 22326 0
dm_region_hash 20813 1 dm_mirror
dm_log 18411 2 dm_region_hash,dm_mirror
dm_mod 128595 2 dm_log,dm_mirror
iTCO_wdt 13572 0
iTCO_vendor_support 13242 1 iTCO_wdt
sb_edac 32114 0
intel_powerclamp 14451 0
coretemp 13444 0
intel_rapl 19451 0
iosf_mbi 15582 1 intel_rapl
kvm 653928 0
ipmi_ssif 29595 0
irqbypass 13503 1 kvm
crc32_pclmul 13133 0
ghash_clmulni_intel 13273 0
cryptd 21190 1 ghash_clmulni_intel
sg 40719 0
pcspkr 12718 0
i2c_i801 22736 0
joydev 17389 0
lpc_ich 21086 0
mei_me 32848 0
mei 95246 1 mei_me
ioatdma 71905 0
ipmi_si 59965 0
ipmi_devintf 17459 0
ipmi_msghandler 56728 3 ipmi_ssif,ipmi_devintf,ipmi_si
ip_tables 27126 0
ext4 592325 2
mbcache 14958 1 ext4
jbd2 107486 1 ext4
mlx4_en 121065 0
sd_mod 46281 4
crc_t10dif 12912 2 target_core_mod,sd_mod
crct10dif_generic 12647 0
mgag200 40946 1
drm_kms_helper 186531 1 mgag200
syscopyarea 12529 1 drm_kms_helper
sysfillrect 12701 1 drm_kms_helper
sysimgblt 12640 1 drm_kms_helper
fb_sys_fops 12703 1 drm_kms_helper
ttm 100769 1 mgag200
isci 141644 0
ahci 34056 0
drm 468454 4 ttm,drm_kms_helper,mgag200
mlx4_core 324088 2 mlx4_en,mlx4_ib
libsas 79001 1 isci
libahci 31992 1 ahci
scsi_transport_sas 41224 2 isci,libsas
igb 223919 0
megaraid_sas 163773 3
libata 247190 3 ahci,libahci,libsas
crct10dif_pclmul 14307 1
crct10dif_common 12595 3 crct10dif_pclmul,crct10dif_generic,crc_t10dif
crc32c_intel 22094 0
ptp 23551 2 igb,mlx4_en
devlink 60067 3 mlx4_en,mlx4_ib,mlx4_core
pps_core 19057 1 ptp
drm_panel_orientation_quirks 17180 1 drm
dca 15130 2 igb,ioatdma
i2c_algo_bit 13413 2 igb,mgag200

Any idea whats going wrong?

Best regards
Frank

Re: Intel MPI 2021.7 on cluster

SantoshY_Intel — Thu, 09 Mar 2023 06:45:05 GMT

Hi,

Thanks for posting in Intel communities.

Could you please provide us with the outputs for the below commands?

$ucx_info -d | grep Transport
$ibv_devinfo
$lspci | grep Mellanox
$fi_info --list

Also, please provide us with the below details:

Job scheduler
CPU details

Thanks & Regards,

Santosh

Re: Intel MPI 2021.7 on cluster

Frank_R_1 — Thu, 09 Mar 2023 12:17:43 GMT

$ export UCX_TLS=rc,ud,sm,self
$ ucx_info -d | grep Transport
# Transport: posix
# Transport: sysv
# Transport: self
# Transport: tcp
# Transport: tcp
# Transport: cma

$ ibv_devinfo
hca_id: mlx4_0
transport: InfiniBand (0)
fw_ver: 2.40.7000
node_guid: 0025:90ff:ff17:3624
sys_image_guid: 0025:90ff:ff17:3627
vendor_id: 0x02c9
vendor_part_id: 4099
hw_ver: 0x1
board_id: SM_2181000001000
phys_port_cnt: 1
port: 1
state: PORT_ACTIVE (4)
max_mtu: 4096 (5)
active_mtu: 4096 (5)
sm_lid: 1
port_lid: 3
port_lmc: 0x00
link_layer: InfiniBand

$ lspci | grep Mellanox
06:00.0 Network controller: Mellanox Technologies MT27500 Family [ConnectX-3]

$ fi_info --list
psm2:
version: 1.7
psm:
version: 1.7
usnic:
version: 1.0
ofi_rxm:
version: 1.0
ofi_rxd:
version: 1.0
verbs:
version: 1.0
UDP:
version: 1.1
sockets:
version: 2.0
tcp:
version: 0.1
ofi_perf_hook:
version: 1.0
ofi_noop_hook:
version: 1.0
shm:
version: 1.0
ofi_mrail:
version: 1.0

$ cat /proc/cpuinfo | grep "model name"
model name : Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz

Queue System : Torque

Re: Intel MPI 2021.7 on cluster

SantoshY_Intel — Mon, 13 Mar 2023 15:22:44 GMT

Hi,

Thanks for providing the details.

Below are our observations:
1. There is no MLX in your fi_info --list output.

It is likely that the Mellanox OFED (OpenFabrics Enterprise Distribution) drivers may not be installed on your system. Make sure that the Mellanox OFED drivers are installed and configured properly. You can check whether the Mellanox OFED drivers are installed by running the command: "$ ofed_info -s".

2. There is no transport related to mlx from the output of "$ ucx_info -d | grep Transport" command.

Check whether the MLNX_OFED stack is installed on your system, you can use the command: $ rpm -qa | grep mlnx

If the output shows that the MLNX_OFED stack is not installed, you will need to install it first.

it's also possible that your Mellanox network adapter is not supported by UCX or that there is some other configuration issue with your system.

3. Also, I can see that you are using older versions of libfabrics.

According to the "Fabric Software" section of Intel MPI system requirements, the minimum OFI version required is 1.5.0 but, it is recommended to use the latest OFI version. To check your OFI version, use the command: $ fi_info --version

Please update your libfabrics and try again. For more information, please go through Building and Installing Libfabric from the Source article.

Thanks & Regards,

Santosh

Re:Intel MPI 2021.7 on cluster

SantoshY_Intel — Mon, 20 Mar 2023 05:40:34 GMT

Hi,

We haven't heard back from you. Could you please provide us with an update on your issue?

Thanks & Regards,

Santosh

Re:Intel MPI 2021.7 on cluster

SantoshY_Intel — Mon, 27 Mar 2023 05:22:45 GMT

Hi,

I have not heard back from you. This thread will no longer be monitored by Intel. If you need further assistance, please post a new question.

Thanks & Regards,

Santosh