icc: command not found.

Abdelghany — Sun, 10 Dec 2023 19:10:29 GMT

Dear OneAPI developers,

In trying to solve this issue, I reinstalled intel-hpckit. Now I am trying to use it to compile the BerkeleyGW code. I used the following config file:

COMPFLAG = -DINTEL PARAFLAG = -DMPI -DOMP MATHFLAG = -DUSESCALAPACK -DUNPACKED -DUSEFFTW3 -DHDF5 -DUSEMR3 # -DUSEPRIMME # Only uncomment DEBUGFLAG if you need to develop/debug BerkeleyGW. # The output will be much more verbose, and the code will slow down by ~20%. #DEBUGFLAG = -DDEBUG ######################################################################### # NOTE: This arch.mk is used by the testsuite. The compiler flags are # # optimized to debug the code and not for code performance. # ######################################################################### FCPP = /usr/bin/cpp -C -nostdinc # -ansi # Intel oneAPI Compiler Options F90free = mpiifort -free -O3 -qopenmp -g -traceback LINK = mpiifort -free -O3 -qopenmp -g -traceback FOPTS = -O3 FNOOPTS = $(FOPTS) MOD_OPT = -module ./ INCFLAG = -I # Intel oneAPI C Compiler Options CC_COMP = mpiicpc -qopenmp C_COMP = mpiicc -qopenmp C_LINK = mpiicc -qopenmp C_OPTS = -O3 C_DEBUGFLAG = REMOVE = /bin/rm -f # Math Libraries MKLROOT = /opt/intel/oneapi/mkl/latest FFTWLIB = $(MKLROOT)/lib/intel64/libmkl_scalapack_lp64.a -Wl,--start-group $(MKLROOT)/lib/intel64/libmkl_intel_lp64.a \ $(MKLROOT)/lib/intel64/libmkl_intel_thread.a $(MKLROOT)/lib/intel64/libmkl_core.a $(MKLROOT)/lib/intel64/libmkl_blacs_intelmpi_lp64.a \ -Wl,--end-group -lpthread -lm FFTWINCLUDE = $(MKLROOT)/include/fftw/ LAPACKLIB = $(FFTWLIB) # HDF5 Library Options HDF5_LDIR = /usr/lib64 HDF5LIB = $(HDF5_LDIR)/libhdf5hl_fortran.a \ $(HDF5_LDIR)/libhdf5_hl.a \ $(HDF5_LDIR)/libhdf5_fortran.a \ $(HDF5_LDIR)/libhdf5.a -lz -ldl HDF5INCLUDE = /usr/include TESTSCRIPT =

But I got the following Error:

make[4]: Entering directory '/rhome/Ragab/source_codes/BerkeleyGW-3.0.1' /usr/bin/cpp -C -nostdinc -I./Common -DINTEL -DMPI -DOMP -DUSESCALAPACK -DUNPACKED -DUSEFFTW3 -DHDF5 -DUSEMR3 Common/nrtype.f90 > Common/nrtype.p.f mpiicc -qopenmp -I./Common -DINTEL -c -O3 Common/os_c.c -o Common/os_c.o /usr/bin/cpp -C -nostdinc -I./Common -DINTEL -DMPI -DOMP -DUSESCALAPACK -DUNPACKED -DUSEFFTW3 -DHDF5 -DUSEMR3 Common/scalapack_aux.f90 > Common/scalapack_aux.p.f /usr/bin/cpp -C -nostdinc -I./Common -DINTEL -DMPI -DOMP -DUSESCALAPACK -DUNPACKED -DUSEFFTW3 -DHDF5 -DUSEMR3 Common/blas.f90 > Common/blas.p.f /usr/bin/cpp -C -nostdinc -I./Common -DINTEL -DMPI -DOMP -DUSESCALAPACK -DUNPACKED -DUSEFFTW3 -DHDF5 -DUSEMR3 Common/lapack.f90 > Common/lapack.p.f /opt/intel/oneapi/mpi/latest/bin/mpiicx: line 552: icc: command not found mpiifort -free -O3 -qopenmp -g -traceback -I ./Common -I /opt/intel/oneapi/mkl/latest/include/fftw/ -I /usr/include -c -O3 Common/nrtype.p.f -o Common/nrtype.o -module ./Common/ make[4]: *** [Common/common-rules.mk:314: Common/os_c.o] Error 127 make[4]: *** Waiting for unfinished jobs.... mpiifort -free -O3 -qopenmp -g -traceback -I ./Common -I /opt/intel/oneapi/mkl/latest/include/fftw/ -I /usr/include -c -O3 Common/scalapack_aux.p.f -o Common/scalapack_aux.o -module ./Common/ mpiifort -free -O3 -qopenmp -g -traceback -I ./Common -I /opt/intel/oneapi/mkl/latest/include/fftw/ -I /usr/include -c -O3 Common/blas.p.f -o Common/blas.o -module ./Common/ mpiifort -free -O3 -qopenmp -g -traceback -I ./Common -I /opt/intel/oneapi/mkl/latest/include/fftw/ -I /usr/include -c -O3 Common/lapack.p.f -o Common/lapack.o -module ./Common/ make[4]: Leaving directory '/rhome/Ragab/source_codes/BerkeleyGW-3.0.1' make[3]: *** [Makefile:8: pre] Error 2 make[3]: Leaving directory '/rhome/Ragab/source_codes/BerkeleyGW-3.0.1' make[2]: *** [Makefile:115: all] Error 2 make[2]: Leaving directory '/rhome/Ragab/source_codes/BerkeleyGW-3.0.1' make[1]: *** [Makefile:126: real] Error 2 make[1]: Leaving directory '/rhome/Ragab/source_codes/BerkeleyGW-3.0.1' make: *** [Makefile:119: all-flavors] Error 2

Are there any suggestions to solve it?

Thank you in advance.

Ragab.

Re: icc: command not found.

VeenaJ_Intel — Tue, 12 Dec 2023 12:20:59 GMT

Hi,

Thanks for posting in Intel communities!

We endeavored to recreate the issue by carefully following the provided steps:

Ensured the latest MPI was sourced.

Duplicated the config/stampede.tacc.utexas.edu_threaded_hdf5.mk configuration file to create arch.mk.

Made necessary edits to arch.mk in accordance with your configuration.

Executed the command make all-flavors -j 16.

Regrettably, we encountered some issues during this process. I have attached the log file. If possible, could you please confirm whether the recreation steps are accurate? If not, kindly provide us with the detailed recreation steps.

Your assistance in clarifying these details would be immensely helpful.

Regards,

Veena

Re: icc: command not found.

Abdelghany — Thu, 14 Dec 2023 06:37:21 GMT

Hi Veena,

Thank you for your reply. Here are the steps I followed to compile BerkeleyGW-3.0.1 using Intel oneAPI Compiler:

1- Downloading and extracting the source code (BerkeleyGW-3.0.1.tar.gz)
2- Copy the appropriate *.mk file from the config directory to the working directory and rename it arch.mk.
3- Edit arch.mk to fit your needs (as shown above)
4- Copy the file flavor_cplx.mk to flavor.mk
5- Executed the command make all-flavors -j 16

After doing these steps I got the same error. Please find the attached log file.

Best Regards

Ragab

Re:icc: command not found.

TobiasK — Fri, 05 Jan 2024 09:48:21 GMT

@Abdelghany

please have a look at this announcement here:

https://community.intel.com/t5/Intel-HPC-Toolkit/REMOVAL-NOTICE-Intel-C-Compiler-Classic/td-p/1545799

ICC is no longer available. Instead you have to switch to ICX, our new, LLVM based C compiler. IFORT will also be removed at some point, as mentioned here:

https://community.intel.com/t5/Intel-HPC-Toolkit/DEPRECATION-NOTICE-Intel-Fortran-Compiler-Classic-ifort/td-p/1545785

topic Re:icc: command not found. in Intel® MPI Library

icc: command not found.

Re: icc: command not found.

Re: icc: command not found.

Re:icc: command not found.