topic Hi Gaurav, in Intel® MPI Library

How to get intel compiler support on HPC server

gambhir__gaurav — Wed, 15 Apr 2020 10:16:12 GMT

Dear Intel Team I am a Ph.D. research scholar and qualified for student license(Intel Parallel Studio XE), presently using High Performace Computing (HPC) at IITD, http://supercomputing.iitd.ac.in/ I need help in installing intel compiler with OpenMP support, in my account (nonroot installation) on the HPC server. I do not have admin/root/sudo access, and there is no internet connectivity on the machine( HPC cannot connect to the internet) Please guide, what steps do I need to follow,

download the compiler bundle

Hearns__John — Wed, 15 Apr 2020 19:53:32 GMT

download the compiler bundle to your laptop.

then look here http://supercomputing.iitd.ac.in/?access#outside

Looks like there may be the intel compiler 2015 version on that system.

What does module avail give you?

Hi Gaurav,

PrasanthD_intel — Thu, 16 Apr 2020 07:46:58 GMT

Hi Gaurav,

You can download the product offline and copy the installer to the login node.

Since you don't have sudo access you can specify the location to install during installation.

For more information regarding installation, you go through the installation guide.

To use OpenMP along with intel compilers you just have to add -qopenmp while compiling the code.

Ex: icc -qopenmp -c parallel.cpp

For more details along with an example please go through Adding OpenMP* Support to your Application.

Regards

Prasanth

Hi Gaurav,

PrasanthD_intel — Mon, 20 Apr 2020 13:45:10 GMT

Hi Gaurav,

Is your installation successful?

Do let us know if you need any help.

Regards

Prasanth

Thank you, Team,

gambhir__gaurav — Mon, 20 Apr 2020 13:54:05 GMT

Thank you, Team,

Installation guide is really helpful, but still, I am facing one issue

How to get Xorg X11 libXss runtime library installed on the HPC server without admin privileges, I am getting the following message

Prerequisites > Missing Critical Prerequisite(s)
--------------------------------------------------------------------------------
There are one or more critical unresolved issues which prevent setup from
continuing. You can fix them without exiting the setup program and re-check. Or
you can exit the setup program, fix them and run the setup program again.
--------------------------------------------------------------------------------
Missing critical prerequisite
-- Xorg X11 libXss runtime library is not found. 'Graphical user interface'
component of VTune Profiler cannot be installed.
--------------------------------------------------------------------------------

1. Show the detailed info about issue(s) [ default ]
2. Re-check the prerequisites

h. Help
b. Back
q. Quit installation

--------------------------------------------------------------------------------
Please type a selection or press "Enter" to accept default choice [ 1 ]:

Hi Gaurav,

PrasanthD_intel — Tue, 21 Apr 2020 12:58:00 GMT

Hi Gaurav,

Installing Xorg X11 libXss runtime library requires root access as they are display drivers.

You can opt for CLI install, in this case, the installer will not require the presence of OS GUI components such as Xorg X11 server.

As mentioned in Installation guide Section 3.6, the installation of some features of Vtune requires root access.

Can you skip the Vtune installation or is this problem stopping the product installation?

Let me know the status.

Regards

Prasanth

Sir

gambhir__gaurav — Tue, 21 Apr 2020 14:25:31 GMT

Sir

This problem is stopping the product installation, I tried again to verify, please find below the steps

1. Activate offline using a license file [ default ]
2. Use Intel(R) Software License Manager to find an existing license file

h. Help
b. Back
q. Quit installation

--------------------------------------------------------------------------------
Please type a selection or press "Enter" to accept default choice [ 1 ]: 1
Please type the full path to your license file(s):
~/scratch/tmp/psxe_staging_area/NCOM_L___S477-LC3WTXKH.lic
Activation completed successfully.
--------------------------------------------------------------------------------
Press "Enter" key to continue:
Configuration > Configure Cluster Installation
--------------------------------------------------------------------------------
Where would you like to install?

This product can be installed on cluster nodes.
--------------------------------------------------------------------------------

1. Finish configuring installation target [ default ]
2. Installation Target [ Current System (Single - Node) ]

h. Help
b. Back
q. Quit installation

--------------------------------------------------------------------------------
Please type a selection or press "Enter" to accept default choice [ 1 ]: 1

Configuration > Pre-install Summary
--------------------------------------------------------------------------------
Install location:
/home/cc/visitor/hpcku002.visitor/intel

The following components will be installed:
Intel Trace Analyzer and Collector 2020 Update 1 403MB
Intel Trace Analyzer for Intel(R) 64 Architecture 78MB
Intel Trace Collector for Intel(R) 64 Architecture 233MB

Intel Cluster Checker 2019 Update 8 220MB
Cluster Checker 137MB

Intel VTune Profiler 2020 Update 1 2.1GB
Command line interface 1.1GB
Sampling Driver kit 3MB
Graphical user interface 1.3GB
Platform Profiler 618MB

Intel Inspector 2020 Update 1 354MB
Command line interface 221MB
Graphical user interface 55MB
--More--[Press space to continue, 'q' to quit.]
Intel Advisor 2020 Update 1 996MB
Command line interface 379MB
Graphical user interface 733MB
Flow Graph Analyzer 185MB

Intel C++ Compiler 19.1 Update 1 1.3GB
Intel C++ Compiler 1.1GB

Intel Fortran Compiler 19.1 Update 1 590MB
Intel Fortran Compiler 435MB

Intel Math Kernel Library 2020 Update 1 for C/C++ 2.8GB
Intel MKL core libraries for C/C++ 10MB
Cluster support for C/C++ 11MB
Intel TBB threading support 54MB
PGI* C/C++ compiler support 11MB
GNU* C/C++ compiler support 74MB

Intel Math Kernel Library 2020 Update 1 for Fortran 2.7GB
Intel MKL core libraries for Fortran 6MB
Cluster support for Fortran 7MB
GNU* Fortran compiler support 145MB
--More--[Press space to continue, 'q' to quit.]
Fortran 95 interfaces for BLAS and LAPACK 33MB

Intel Integrated Performance Primitives 2020 Update 1 4.2GB
Intel IPP single-threaded libraries: General package 1.4GB
Intel IPP multi-threaded libraries 1.9GB

Intel Threading Building Blocks 2020 Update 2 153MB
Intel TBB 124MB

Intel Data Analytics Acceleration Library 2020 Update 1 4.1GB
Intel Data Analytics Acceleration Library 2020 Update 1 2.2GB

Intel MPI Library 2019 Update 7 1.0GB
Intel MPI Benchmarks 2MB
Intel MPI Library for applications running on Intel(R) 64 Architecture 1
.0GB

GNU* GDB 8.3 226MB
GNU* GDB 8.3 on Intel(R) 64 93MB
Source of GNU* GDB 8.3 91MB
Python sources 26MB

Intel(R) Distribution for Python* 6.2GB
--More--[Press space to continue, 'q' to quit.]
Intel(R) Distribution for Python* 3 for Linux* 3.8GB

Install space required: 17.7GB

Driver parameters:
Sampling driver install type: Only driver kit files will be installed.
Hardware sampling analysis will use driverless Perf collection. For more
information,
see https://www.kernel.org/doc/html/latest/admin-guide/perf-security.htm
l
Installation Target:
Install on the current system only

--------------------------------------------------------------------------------

1. Accept configuration and begin installation [ default ]
2. Customize installation

h. Help
b. Back
q. Quit installation

--------------------------------------------------------------------------------
Please type a selection or press "Enter" to accept default choice [ 1 ]:
WARNING: Destination directory already exists.
--------------------------------------------------------------------------------
Do you want to continue?
--------------------------------------------------------------------------------

n. No
y. Yes

--------------------------------------------------------------------------------
Please type a selection or press "Enter" to accept default choice [ n ]:
Please type a selection or press "Enter" to accept default choice [ n ]: y
--------------------------------------------------------------------------------
Checking the prerequisites. It can take several minutes. Please wait...
--------------------------------------------------------------------------------

cat: /proc/asound/version: No such file or directory

h. Help
b. Back
q. Quit installation

--------------------------------------------------------------------------------
Please type a selection or press "Enter" to accept default choice [ 1 ]: 1

Prerequisites > Missing Critical Prerequisite
--------------------------------------------------------------------------------
The install program cannot detect the Xorg X11 libXss runtime library required
by the graphical user interface of the product.

To install Xorg X11 libXss runtime library, execute one of the following
commands specific to your operating system:
- Ubuntu / Debian:
sudo apt-get install libxss1
- Red Hat Enterprise Linux / CentOS:
sudo yum install libXScrnSaver
- Fedora:
sudo dnf install libXScrnSaver
- SUSE Linux Enterprise Server:
sudo zypper install libXss1
- Clear Linux:
sudo swupd bundle-add devpkg-libXScrnSaver

Otherwise, go back and unselect 'Graphical user interface' component.
--------------------------------------------------------------------------------

1. Finish with prerequisites and back to Critical Prerequisites dialog [
default ]
2. Back to Prerequisite summary dialog

h. Help
b. Back
q. Quit installation

--------------------------------------------------------------------------------
Please type a selection or press "Enter" to accept default choice [ 1 ]: 1

h. Help
b. Back
q. Quit installation

--------------------------------------------------------------------------------
Please type a selection or press "Enter" to accept default choice [ 1 ]: q

Dear Team

gambhir__gaurav — Thu, 23 Apr 2020 08:07:46 GMT

Dear Team

I enquired HPC IIT Delhi, http://supercomputing.iitd.ac.in/ , for the same issue, they said, they provide access to intel parallel studio 2020 to their institute students, as its a licensed software

As I am also a student, but of different institute, so outsiders are having access to only open-source software,

since I am not able to install the software in my account because of above mentioned issue, may I request them to use their institute license.

Hi Gaurav,

PrasanthD_intel — Thu, 23 Apr 2020 09:55:36 GMT

Hi Gaurav,

During installation after Configuration > Pre-install Summary step, you reach Installation target.

From here please select the options I mentioned:

1) Installation Target:
Install on the current system only

--------------------------------------------------------------------------------

1. Accept configuration and begin installation [ default ]
2. Customize installation

Here select option 2 to customize the installation

Configuration > Architecture selection
--------------------------------------------------------------------------------
Select the target architecture(s) where the applications you develop will run.
--------------------------------------------------------------------------------

1. IA-32
2. Intel(R) 64

3. Finish architecture selection [ default ]
Here select the architecture whose components you want to install, or select 3 or press enter to install both(recommended)

Review the configuration settings below. You can customize the settings or
accept them and begin installation now.
--------------------------------------------------------------------------------

1. Accept configuration and begin installation [ default ]

2. Change install Directory [ /home/sdp/intel ]
3. Change components to install [ All ]
4. View pre-install summary

Here select option 3 and remove Vtune and any other components you don't need. [Hint: First unselect all component by pressing a and select each component by giving their number in list as input]

I think this will solve the Xorg X11 libXss runtime library is not found issue.

Let me know the status.

Regards

Prasanth

Finally it's installed except

gambhir__gaurav — Thu, 23 Apr 2020 12:57:51 GMT

Finally it's installed except the Graphical user interface component of VTune Profiler.

Thank you, sir

Hi Gaurav,

PrasanthD_intel — Fri, 24 Apr 2020 06:07:43 GMT

Hi Gaurav,

Since your issue has been resolved. We are closing this thread

Please raise a new thread for further queries.

Thanks

Prasanth