topic Re:Tuning Genomics Analytics in Intel® MPI Library

Tuning Genomics Analytics

CyNelson — Thu, 12 May 2022 00:40:34 GMT

Is there a tuning guide for genomics analytics? I'm working with the Broad Institute tech stack and hoping I can speed up my experiments.

Re: Tuning Genomics Analytics

SantoshY_Intel — Fri, 13 May 2022 07:05:36 GMT

Hi,

Thank you for posting in Intel Communities.

We couldn't find any tuning guide specific to Genomics Analytics. We will get back to you if we find any such tuning guide. For the time being please refer to the below link:

https://www.intel.com/content/www/us/en/products/docs/select-solutions/genomics-analytics-ver3-spotlight.html

However, we do have an MPI Tuning guide for MPI-based applications. For more information refer to the below link:

https://www.intel.com/content/www/us/en/develop/documentation/mpi-developer-guide-linux/top/analysis-and-tuning/mpi-tuning.html

Thanks & Regards,

Santosh

Re: Re:Tuning Genomics Analytics

CyNelson — Thu, 12 May 2022 16:37:44 GMT

Santosh,

Thanks for your quick reply. That information is helpful. I also wanted to share some good news! I went the Stackoverflow Intel and found the Developers Program portal. Here's the link to the Genomics Analytics Tuning Guide:

https://www.intel.com/content/www/us/en/developer/articles/guide/tuning-guide-for-genomics-analytics.html

Looks like it was published March 9, 2022 so it is quite new.

Re:Tuning Genomics Analytics

SantoshY_Intel — Fri, 13 May 2022 07:55:31 GMT

Hi,

Glad to know that your issue is resolved. Thanks for sharing the solution with us. If you need any additional information, please post a new question as this thread will no longer be monitored by Intel.

Thanks & Regards,

Santosh