Re: Intel oneAPI with Podman

ugiwgh — Tue, 28 Jun 2022 10:45:58 GMT

Hi,

I have send email to supportreplies@intel.com with my wugh@paratera.com. Do you recieve it?

The email msg as following .

--------------------------------

I'm sorry. In intel/oneapi-hpckit:devel-ubuntu20.04 container, I cd to /opt/intel/oneapi/mpi/2021.6.0/test directory. And mpicc test.c, but when I execute ./a.out, it's Segmentation fault.

So the image has something wrong. I could provide the dockerfile.

centos.oneapi.dockerfile

---------- FILE START ----------

FROM docker.io/library/centos:centos7.9.2009

RUN yum install -y wget make rsync gcc gcc-c++

WORKDIR /root

ADD l_BaseKit_p_2022.1.2.146_offline.sh .

RUN bash l_BaseKit_p_2022.1.2.146_offline.sh -a -s --eula accept --components intel.oneapi.lin.mkl.devel && rm -rf l_BaseKit_p_2022.1.2.146_offline.sh

ADD l_HPCKit_p_2022.1.2.117_offline.sh .

RUN bash l_HPCKit_p_2022.1.2.117_offline.sh -a -s --eula accept --components intel.oneapi.lin.ifort-compiler:intel.oneapi.lin.dpcpp-cpp-compiler-pro:intel.oneapi.lin.mpi.devel && rm -rf l_HPCKit_p_2022.1.2.117_offline.sh

ENV MKLROOT=/opt/intel/oneapi/mkl/2022.0.2

ENV PATH=/opt/intel/oneapi/mpi/2021.5.1//libfabric/bin:/opt/intel/oneapi/mpi/2021.5.1//bin:/opt/intel/oneapi/mkl/2022.0.2/bin/intel64:/opt/intel/oneapi/dev-utilities/2021.5.2/bin:/opt/intel/oneapi/debugger/2021.5.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.0.2/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.0.2/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.0.2/linux/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/vasp.5.4.4/bin

ENV LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.5.1/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.5.1//libfabric/lib:/opt/intel/oneapi/mpi/2021.5.1//lib/release:/opt/intel/oneapi/mpi/2021.5.1//lib:/opt/intel/oneapi/mkl/2022.0.2/lib/intel64:/opt/intel/oneapi/compiler/2022.0.2/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.0.2/linux/lib

ENV LD_LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.5.1/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.5.1//libfabric/lib:/opt/intel/oneapi/mpi/2021.5.1//lib/release:/opt/intel/oneapi/mpi/2021.5.1//lib:/opt/intel/oneapi/mkl/2022.0.2/lib/intel64:/opt/intel/oneapi/debugger/2021.5.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.5.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.5.0/dep/lib:/opt/intel/oneapi/compiler/2022.0.2/linux/lib:/opt/intel/oneapi/compiler/2022.0.2/linux/lib/x64:/opt/intel/oneapi/compiler/2022.0.2/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.0.2/linux/compiler/lib/intel64_lin

ENV I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.5.1

ENV FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.5.1//libfabric/lib/prov:/usr/lib64/libfabric

CMD source /opt/intel/oneapi/setvars.sh

---------- FILE END ----------

On my host Intel MPI version is

$ mpirun --version

Intel(R) MPI Library for Linux* OS, Version 2021.5 Build 20211102 (id: 9279b7d62)

$ mpirun -np 2 ./mpitest

Hello world: rank 0 of 2 running on ga2210.para.bscc

Hello world: rank 1 of 2 running on ga2210.para.bscc

$ mpirun -np 2 podman run --env-host --env-file envfile --userns=keep-id --network=host --pid=host --ipc=host -v .:/export:z 273b79f14177 /export/mpitest

[cli_0]: write_line error; fd=9 buf=:cmd=init pmi_version=1 pmi_subversion=1