topic Re:mkl modulefiles loading error in OneApi toolkit in Intel® oneAPI Math Kernel Library

mkl modulefiles loading error in OneApi toolkit

yannj — Mon, 01 Mar 2021 12:45:02 GMT

I installed the current compilers/mkl lib on a centos.

The version of the compiler is : compiler/2021.1.2

The version of the mkl version is : mkl/2021.1.1

When i'm trying to load the mkl, i've got the error :

lio5-devel% module load mkl/latest Loading mkl version 2021.1.1 ERROR: Unable to locate a modulefile for 'compiler-rt/2021.1.1'

So i installed compiler-rt/2021.1.1 with the package :

intel-oneapi-compiler-dpcpp-cpp-runtime-2021.1.1

Therefore, i can now load the mkl, but then i cannot load the lastest compiler !

lio5-devel% module load compiler/2021.1.2 Loading compiler version 2021.1.2 WARNING: tbb/latest cannot be loaded due to a conflict. HINT: Might try "module unload tbb" first.

The problem is that the compiler-rt version is older than the lastest compiler, but is needed for the mkl modulefiles.

What is the good way to load the intel mkl with the lastest compiler ?

Thanks in advance,

Yann

Re: mkl modulefiles loading error in OneApi toolkit

RahulV_intel — Wed, 03 Mar 2021 11:23:36 GMT

Hi Yann,

The latest version of the DPC++ compiler runtime 2021.1.2 seems to be available via APT. I have installed it on ubuntu 18.04. However, I do not have the CentOS environment to try out.

Could you please try out the steps below:

Firstly, setup the oneAPI repository, as given in the link below:

https://software.intel.com/content/www/us/en/develop/articles/installing-intel-oneapi-toolkits-via-yum.html#inpage-nav-1

If you have already set the repository, make sure that you update all the packages.

To list all the oneAPI packages, use this command:

# YUM: sudo -E yum --disablerepo="*" --enablerepo="oneAPI" list available # DNF: sudo -E dnf --disablerepo="*" --enablerepo="oneAPI" list available

Search for "intel-oneapi-compiler-dpcpp-cpp-runtime-2021.1.2" and if you find it, you may either install/upgrade this package.

Let me know in case you don't see the latest version.

Thanks,

Rahul

Re: mkl modulefiles loading error in OneApi toolkit

yannj — Wed, 03 Mar 2021 12:32:39 GMT

Hi Rahul,

Thanks for taking the time to help me.

I think it's great that oneAPI includes scripts for modules. It's so useful. But it looks like it's broken for the mkl lib.

I've got all the rpm already updated

# yum --disablerepo="*" --enablerepo="oneAPI" update Modules complémentaires chargés : copr, fastestmirror, langpacks, nvidia Loading mirror speeds from cached hostfile No packages marked for update

Here are the available modules :

--------------------------------------------------- /opt/intel/oneapi/modulefiles ---------------------------------------------------- advisor/2021.1.1 compiler-rt32/latest dev-utilities/2021.1.1 dpct/latest itac/2021.1.1 tbb/latest advisor/latest compiler/2021.1.1 dev-utilities/latest dpl/2021.1.2 itac/latest vpl/2021.1.1 ccl/2021.1.1 compiler/2021.1.2 dnnl-cpu-gomp/2021.1.1 dpl/latest mkl/2021.1.1 vpl/latest ccl/latest compiler/latest dnnl-cpu-gomp/latest init_opencl/2021.1.2 mkl/latest vtune/2021.1.2 clck/2021.1.1 compiler32/2021.1.1 dnnl-cpu-iomp/2021.1.1 init_opencl/latest mkl32/2021.1.1 vtune/latest clck/latest compiler32/2021.1.2 dnnl-cpu-iomp/latest inspector/2021.1.1 mkl32/latest compiler-rt/2021.1.1 compiler32/latest dnnl-cpu-tbb/2021.1.1 inspector/latest mpi/2021.1.1 compiler-rt/2021.1.2 dal/2021.1.1 dnnl-cpu-tbb/latest intel_ipp_intel64/2021.1.1 mpi/latest compiler-rt/latest dal/latest dnnl/2021.1.1 intel_ipp_intel64/latest oclfpga/2021.1.2 compiler-rt32/2021.1.1 debugger/10.0.0 dnnl/latest intel_ippcp_intel64/2021.1.1 oclfpga/latest compiler-rt32/2021.1.2 debugger/latest dpct/2021.1.1 intel_ippcp_intel64/latest tbb/2021.1.1

When i'm trying to load the latest compiler (2021.1.2) with the latest mkl (2021.1.1) i've got the error :

jobic@lio5:~$ module load compiler/latest mkl/latest Loading compiler version 2021.1.2 Loading tbb version 2021.1.1 Loading debugger version 10.0.0 Loading compiler-rt version 2021.1.2 Loading dpl version 2021.1.2 Loading oclfpga version 2021.1.2 Loading mkl version 2021.1.1 WARNING: compiler-rt/2021.1.1 cannot be loaded due to a conflict. HINT: Might try "module unload compiler-rt" first.

That's because in the module script, it's trying to load compiler-rt/2021.1.1 by default, which conflicts with my latest rt version.

I can still use everything by loading directly the bash environment scripts :

source /opt/intel/oneapi/compiler/2021.1.2/env/vars.sh source /opt/intel/oneapi/mkl/2021.1.1/env/vars.sh

But i wanted it to work with modules.

Do you see where the problem is ?

Thanks,

Yann

Re: mkl modulefiles loading error in OneApi toolkit

yannj — Wed, 03 Mar 2021 13:27:46 GMT

Hi again,

I tried to desintall/reinstall everything

# yum --disablerepo="*" --enablerepo="oneAPI" remove '*oneapi*' # yum --disablerepo="*" --enablerepo="oneAPI" install intel-basekit intel-hpckit

I then run the script

# ./modulefiles-setup.sh

I loaded everything to check :

# . setvars.sh :: initializing oneAPI environment ... BASH version = 4.2.46(2)-release :: debugger -- latest :: vpl -- latest :: mpi -- latest :: mkl -- latest :: itac -- latest :: intelpython -- latest :: dpcpp-ct -- latest :: clck -- latest :: dev-utilities -- latest :: tbb -- latest :: advisor -- latest :: dpl -- latest :: vtune -- latest :: dal -- latest :: ippcp -- latest :: compiler -- latest :: ccl -- latest :: inspector -- latest :: dnnl -- latest :: ipp -- latest :: oneAPI environment initialized :: # icc -V Intel(R) C Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.1.2 Build 20201208_000000 Copyright (C) 1985-2020 Intel Corporation. All rights reserved.

I then have the following modules :

--------------------------------------------------- /opt/intel/oneapi/modulefiles ---------------------------------------------------- advisor/2021.1.1 compiler/latest dnnl-cpu-iomp/2021.1.1 init_opencl/latest mkl32/2021.1.1 vtune/latest advisor/latest compiler32/2021.1.2 dnnl-cpu-iomp/latest inspector/2021.1.1 mkl32/latest ccl/2021.1.1 compiler32/latest dnnl-cpu-tbb/2021.1.1 inspector/latest mpi/2021.1.1 ccl/latest dal/2021.1.1 dnnl-cpu-tbb/latest intel_ipp_intel64/2021.1.1 mpi/latest clck/2021.1.1 dal/latest dnnl/2021.1.1 intel_ipp_intel64/latest oclfpga/2021.1.2 clck/latest debugger/10.0.0 dnnl/latest intel_ippcp_intel64/2021.1.1 oclfpga/latest compiler-rt/2021.1.2 debugger/latest dpct/2021.1.1 intel_ippcp_intel64/latest tbb/2021.1.1 compiler-rt/latest dev-utilities/2021.1.1 dpct/latest itac/2021.1.1 tbb/latest compiler-rt32/2021.1.2 dev-utilities/latest dpl/2021.1.2 itac/latest vpl/2021.1.1 compiler-rt32/latest dnnl-cpu-gomp/2021.1.1 dpl/latest mkl/2021.1.1 vpl/latest compiler/2021.1.2 dnnl-cpu-gomp/latest init_opencl/2021.1.2 mkl/latest vtune/2021.1.2

I'm still having the same issue :

$ module load compiler/latest mkl/latest Loading compiler version 2021.1.2 Loading tbb version 2021.1.1 Loading debugger version 10.0.0 Loading compiler-rt version 2021.1.2 Loading dpl version 2021.1.2 Loading oclfpga version 2021.1.2 Loading mkl version 2021.1.1 ERROR: Unable to locate a modulefile for 'compiler-rt/2021.1.1'

I should load the latest compiler-rt version, not the old one.

In the module script of oneapi/modulefiles/mkl/latest i've got :

# Load dependencies module load compiler-rt/${modulefilever} module load tbb/${modulefilever}

and i don't have compiler-rt/${modulefilever}, because the version of compiler/latest is 2012.1.2, therefore i have (see above) compiler-rt/2021.1.2, and not compiler-rt/2021.1.1, which is the version of the mkl.

Thanks again,

Yann

Re:mkl modulefiles loading error in OneApi toolkit

RahulV_intel — Fri, 05 Mar 2021 11:19:07 GMT

Hi,

Thanks for reporting your issue. We are working on it and will get back to you.

Thanks,

Rahul

Re:mkl modulefiles loading error in OneApi toolkit

Khang_N_Intel — Tue, 16 Mar 2021 17:55:49 GMT

Hi Yann,

I will take a look at this issue and will let you know what to do next.

Also, I went forum thread and it seems like it is closed.

Khang

Re:mkl modulefiles loading error in OneApi toolkit

Khang_N_Intel — Tue, 25 May 2021 03:13:26 GMT

Hi Yann,

Are you still having problem with loading the modules?

Have you tried the latest version of oneAPI, 2021.2?

Are you using the latest version of CentOS (8.x)?

Re:mkl modulefiles loading error in OneApi toolkit

MRajesh_intel — Tue, 15 Jun 2021 11:55:06 GMT

Hi,

Can you please update us on whether your issue has been resolved or not?

Regards

Rajesh.

Re: Re:mkl modulefiles loading error in OneApi toolkit

yannj — Tue, 15 Jun 2021 13:03:58 GMT

Hi,

Thanks for the heads up.

I reinstalled everything followed the documentation, and load modulefiles with :

# ./modulefiles-setup.sh # module use modulefiles

When i'm trying to load, i've got the error :

# module load compiler mkl Loading compiler version 2021.2.0 Loading tbb version 2021.2.0 Loading debugger version 10.1.1 cmdInfo.c(207):ERROR:11: Usage is 'module-infomode [load|remove|display|help|whatis|switch1|switch2|switch3|switch|nonpersist]' debugger/latest(54):ERROR:102: Tcl command execution failed: if { [ module-info mode unload ] } { puts stderr "Removing $modulefilename version $modulefilever" } Loading compiler-rt version 2021.2.0 compiler/latest(105):ERROR:102: Tcl command execution failed: if { [ is-avail dpl ] } { module load dpl } Loading mkl version 2021.2.0 compiler-rt/2021.2.0(71):ERROR:150: Module 'compiler-rt/2021.2.0' conflicts with the currently loaded module(s) 'compiler-rt/latest' compiler-rt/2021.2.0(71):ERROR:102: Tcl command execution failed: conflict $mname64 tbb/2021.2.0(73):ERROR:150: Module 'tbb/2021.2.0' conflicts with the currently loaded module(s) 'tbb/latest' tbb/2021.2.0(73):ERROR:102: Tcl command execution failed: conflict $mname64

Regards,

Yann

Re:mkl modulefiles loading error in OneApi toolkit

MRajesh_intel — Fri, 18 Jun 2021 07:50:27 GMT

Hi,

Can you please specify the OS version used.

Thanks

Rajesh.

Re:mkl modulefiles loading error in OneApi toolkit

MRajesh_intel — Thu, 24 Jun 2021 08:25:39 GMT

Hi,

Can you please provide the above details?

Regards

Rajesh.

Re: Re:mkl modulefiles loading error in OneApi toolkit

yannj — Thu, 24 Jun 2021 10:33:27 GMT

Hi,

Sorry for the late answer.

I'm on

cat /etc/redhat-release CentOS Linux release 7.6.1810 (Core)

Regards,

Yann

Re:mkl modulefiles loading error in OneApi toolkit

MRajesh_intel — Fri, 25 Jun 2021 07:08:22 GMT

Hi,

We currently do not support CentOS 7.x

Please visit the below link for the system requirements.

https://software.intel.com/content/www/us/en/develop/articles/oneapi-math-kernel-library-system-requirements.html

Regards

Rajesh.

Re:mkl modulefiles loading error in OneApi toolkit

MRajesh_intel — Tue, 29 Jun 2021 05:44:06 GMT

Hi,

We are closing this thread for now as we don't support older CentOS. If you require any additional assistance from Intel, please start a new thread. Any further interaction in this thread will be considered community only.

Have a Good day.

Regards

Rajesh

Re: Re:mkl modulefiles loading error in OneApi toolkit

RobbieTheK — Fri, 19 Jan 2024 19:41:09 GMT

I fixed ours by updating the module file for intel-oneAPI-toolkit/mkl/2023.1.0 and just put the correct module names that correspond to compiler-rt and tbb:

# Load required dependencies

if { ![ is-loaded tbb ] } { module load intel-tbb-oss/intel64/2020.3 }

if { ![ is-loaded compiler-rt ] } { module load intel-oneAPI-toolkit/compiler-rt/2023.1.0 }