topic Undefined symbol errors in Intel® oneAPI Math Kernel Library

Undefined symbol errors

maxwell1234 — Thu, 29 Apr 2010 06:24:02 GMT

Hello Everyone,

I'm trying to modify some antiquated code to use a solver from the intel mkl and I'm having trouble getting ifort to correctly link the code. I had to compile my own copy of the f90 interface to work on my system, which is in ..../mkl/custom/lib/64 etc. Any insight that you can provide is most welcome!

Thanks,

Max

I try to compile with:

ifort bemech.f90 -heap_arrays -L$MKL_LIB -I$MKL_INC -Wl,--start-group $MKL_LIB/libmkl_lapack95_lp64.a -Wl,--end-group -lpthread -liomp5

The error that I receive is:

/data/64/max/sw/intel/ifc/mkl/custom/lib/64/libmkl_lapack95_lp64.a(sgetrf.o): In function `sgetrf_f95_':

source/sgetrf.f90:(.text+0x2b6): undefined reference to `sgetrf_'

source/sgetrf.f90:(.text+0x509): undefined reference to `xerbla_'

/data/64/max/sw/intel/ifc/mkl/custom/lib/64/libmkl_lapack95_lp64.a(sgetri.o): In function `sgetri_f95_':

source/sgetri.f90:(.text+0x28a): undefined reference to `sgetri_'

source/sgetri.f90:(.text+0x367): undefined reference to `xerbla_'

source/sgetri.f90:(.text+0x786): undefined reference to `sgetri_'

/data/64/max/sw/intel/ifc/mkl/custom/lib/64/libmkl_lapack95_lp64.a(sgetrs1.o): In function `sgetrs1_f95_':

source/sgetrs1.f90:(.text+0x332): undefined reference to `sgetrs_'

source/sgetrs1.f90:(.text+0x49f): undefined reference to `xerbla_'

/data/64/max/sw/intel/ifc/mkl/custom/lib/64/libmkl_lapack95_lp64.a(sgetrf.o): In function `sgetrf_f95_':source/sgetrf.f90:(.text+0x2b6): undefined reference to `sgetrf_'source/sgetrf.f90:(.text+0x509): undefined reference to `xerbla_'/data/64/max/sw/intel/ifc/mkl/custom/lib/64/libmkl_lapack95_lp64.a(sgetri.o): In function `sgetri_f95_':source/sgetri.f90:(.text+0x28a): undefined reference to `sgetri_'source/sgetri.f90:(.text+0x367): undefined reference to `xerbla_'source/sgetri.f90:(.text+0x786): undefined reference to `sgetri_'/data/64/max/sw/intel/ifc/mkl/custom/lib/64/libmkl_lapack95_lp64.a(sgetrs1.o): In function `sgetrs1_f95_':source/sgetrs1.f90:(.text+0x332): undefined reference to `sgetrs_'source/sgetrs1.f90:(.text+0x49f): undefined reference to `xerbla_'

The calling program looks like this:

SUBROUTINE INVSOLVR(NROW,NCOL,A,N,INDIC)

use f95_precision, only: wp => sp

use lapack95, only: getrf, getrs, getri

! Solve A x = y

! A array containing A

! NROW, NCOL rows and cols of A

! N number of equations

! After computation, A should contain inverse matrix and vector x

! INDIC = -1 : return just inverse of A

! INDIC = 0 : return inverse of A and x

! INDIC = 1 : return just x

INTEGER(KIND=4) :: IPIV(10000)

INTEGER(KIND=4) IERR

REAL(KIND=4) :: C(10000,10000)

REAL(KIND=4),DIMENSION (:), ALLOCATABLE :: Y

DIMENSION A(NROW,NCOL),W(N),IROW(N)

ALLOCATE(Y(N))

call GETRF( C, IPIV)

! C holds LU factorization of former C

call getrs( C, IPIV, Y, 'N', IERR)

! Y now contains solution.

Undefined symbol errors

barragan_villanueva_ — Thu, 29 Apr 2010 08:25:22 GMT

Hi,

You should add more MKL libraries, not just $MKL_LIB/libmkl_lapack95_lp64.a

Pleasetry Intel MKL Link Line Advisorat the top of MKL Forum to get correct list of MKL libraries

Undefined symbol errors

Gennady_F_Intel — Thu, 29 Apr 2010 11:02:19 GMT

Please change the order linking of the threading libraries : it should be-liomp5-lpthread

instead of"-lpthread -liomp5"

Undefined symbol errors

maxwell1234 — Thu, 29 Apr 2010 17:09:37 GMT

I used the link line adviser and consequently used this compile command:

export MKLPATH=$MKLROOT/lib/intel64

ifort bemech.f90 -heap_arrays -I$MKL_INC -L$MKLPATH/libmkl_solver_ilp64.a -Wl,--start-group $MKLPATH/libmkl_intel_ilp64.a $MKLPATH/libmkl_intel_thread.a $MKLPATH/libmkl_core.a -Wl,--end-group -openmp -lpthread

Unfortunately, there are still undefined references, albeit different ones. Any ideas?

bash-3.2$ ./buildcmd.sh

/tmp/ifortcZUc3U.o: In function `el_solve_':

bemech.f90:(.text+0x1bc8b): undefined reference to `sgetrf_mkl95_'

bemech.f90:(.text+0x1bd61): undefined reference to `sgetrs1_mkl95_'

/tmp/ifortcZUc3U.o: In function `invsolvr_':

bemech.f90:(.text+0x24538): undefined reference to `sgetrf_mkl95_'

bemech.f90:(.text+0x2461a): undefined reference to `sgetrs1_mkl95_'

bemech.f90:(.text+0x246ec): undefined reference to `sgetri_mkl95_'

bemech.f90:(.text+0x24ba1): undefined reference to `sgetrf_mkl95_'

bemech.f90:(.text+0x24c86): undefined reference to `sgetrs1_mkl95_'

bash-3.2$

Thanks!

Max

Undefined symbol errors

maxwell1234 — Thu, 29 Apr 2010 17:12:01 GMT

Never mind - I found the problem! The correct thing to do was to include mkl_lapack95_ilp64.a in addition to those above.