MPI startup fail

VIKRANT_G_ — Fri, 14 Mar 2014 19:03:26 GMT

hello

I am running a MPI program which involves 5 ranks communicating with each other. The program runs fine when i run it on Xeon platform but when i put one of the process rank on MIC the program crashes giving me a segmentation fault

mpi version: intel Mpi, 4.1.1.036

This is how i am setting up the libraries and compiler settings for mic

export LD_LIBRARY_PATH=/opt/intel/composerxe/lib/mic:$LD_LIBRARY_PATH

export I_MPI_MIC=1

scp /opt/intel/impi/4.1.1.036/mic/bin/pmi_proxy mic0:/bin
scp /opt/intel/impi/4.1.1.036/mic/lib/* mic0:/lib64/.

and then i use the below run command:-

mpirun -genv I_MPI_DEBUG 5 -host localhost -n 1 FILE1 : -host mic0 -n 1 ~/FILE2 : -host localhost -n 1 FILE3 : -host localhost -n 1 FILE4: -host localhost -n 1 FILE5

This is the error/ MPI debug message i get

[0] MPI startup(): cannot open dynamic library libdat2.so.2
[4] MPI startup(): cannot open dynamic library libdat2.so.2
[2] MPI startup(): cannot open dynamic library libdat2.so.2
[3] MPI startup(): cannot open dynamic library libdat2.so.2
[4] MPI startup(): cannot open dynamic library libdat2.so
[0] MPI startup(): cannot open dynamic library libdat2.so
[2] MPI startup(): cannot open dynamic library libdat2.so
[0] MPI startup(): cannot open dynamic library libdat.so.1
[4] MPI startup(): cannot open dynamic library libdat.so.1
[3] MPI startup(): cannot open dynamic library libdat2.so
[2] MPI startup(): cannot open dynamic library libdat.so.1
[4] MPI startup(): cannot open dynamic library libdat.so
[0] MPI startup(): cannot open dynamic library libdat.so
[2] MPI startup(): cannot open dynamic library libdat.so
[3] MPI startup(): cannot open dynamic library libdat.so.1
[4] ERROR - load_iblibrary(): Can't open IB verbs library: libibverbs.so: cannot open shared object file: No such file or directory

[2] ERROR - load_iblibrary(): Can't open IB verbs library: libibverbs.so: cannot open shared object file: No such file or directory
[0] ERROR - load_iblibrary(): Can't open IB verbs library: libibverbs.so: cannot open shared object file: No such file or directory

[3] MPI startup(): cannot open dynamic library libdat.so
[3] ERROR - load_iblibrary(): Can't open IB verbs library: libibverbs.so: cannot open shared object file: No such file or directory

[1] MPI startup(): cannot open dynamic library libdat2.so.2
[1] MPI startup(): cannot open dynamic library libdat2.so
[1] MPI startup(): cannot open dynamic library libdat.so.1
[1] MPI startup(): cannot open dynamic library libdat.so
[1] ERROR - load_iblibrary(): Can't open IB verbs library: libibverbs.so: cannot open shared object file: No such file or directory

[3] MPI startup(): shm and tcp data transfer modes
[4] MPI startup(): shm and tcp data transfer modes
[2] MPI startup(): shm and tcp data transfer modes
[0] MPI startup(): shm and tcp data transfer modes
[1] MPI startup(): shm and tcp data transfer modes

Hi,

Sumedh_N_Intel — Mon, 17 Mar 2014 20:15:13 GMT

Hi,

Have you transferred the listed library files (libdat.so, libdat2.so.2, ... ) to coprocessor? Also, I think you will need to set the LD_LIBRARY_PATH on the coprocessor to point to these files.

Hi Vikrant,

Loc_N_Intel — Mon, 17 Mar 2014 23:47:42 GMT

Hi Vikrant,

Just curious, have you tried to download and run your MPI program directly in mic0 instead from host?

hi Ioc-nguyen and Sumedh,

VIKRANT_G_ — Tue, 18 Mar 2014 00:16:49 GMT

hi Ioc-nguyen and Sumedh,

thanks for the inputs

The program runs fine now, the error was due to the code itself, I changed the rank of the processes in the mpirun command but did not update it in the mpi_send and mpi_recv command

topic Hi, in Software Archive

MPI startup fail

Hi,

Hi Vikrant,

hi Ioc-nguyen and Sumedh,