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I have tested a solution for USB-Blaster under Fedora 18 (Kernel 3.6.11-3.fc18.i686).
[root@localhost bin]# ./jtagconfig
No JTAG hardware available
[root@localhost bin]# mount --bind /dev/bus/ /proc/bus
[root@localhost bin]# ln -s /sys/kernel/debug/usb/devices /proc/bus/usb/devices
[root@localhost bin]# ./jtagd
[root@localhost bin]# ./jtagconfig
1) USB-Blaster [USB 1-1.1.3]
020F30DD EP3C25/EP4CE22
[root@localhost bin]# exit
exit
[myself@localhost linux]$ cd ..
[myself@localhost quartus]$ cd bin/
[myself@localhost bin]$ ./quartus
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