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Beginner
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When compiling MCMCirtKdHet.cc, for MCMCpack 1.3-7, receive "internal error: 04010002_1517" error message

Hello,

When trying to compile MCMCirtKdHet.cc, for MCMCpack 1.3-7, for R 3.4.0 (compiled via the instructions at https://software.intel.com/en-us/articles/build-r-301-with-intel-c-compiler-and-intel-mkl-on-linux), the following error messages appear:

/usr/include/c++/4.8.5/bits/stl_function.h(462) (col. 16): internal error: 04010002_1517

compilation aborted for MCMCirtKdHet.cc (code 4)

The build line is:

icpc -I/usr/local/R/3.4.0-intel17.0.4/lib64/R/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC  -DHAVE_TRUNC   -I/usr/local/include   -fpic  -g -O2  -wd308 -c MCMCirtKdHet.cc -o MCMCirtKdHet.o

By replacing "icpc" with "gcc", and removing "-wd308", it compiles without issue.

If I only remove "-wd308", I receive this error:

In file included from ide.h(93),
                 from distributions.h(98),
                 from MCMCirtKdHet.cc(37):
/opt/intel/compilers_and_libraries_2017.4.196/linux/compiler/include/complex(310): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
          return __x / __y._M_value;

I added "-wd308" ~/.R/Makevars to be able to build the "forecast" package.

Additional info: I'm using  Intel® Parallel Studio XE Cluster Edition for Linux 2017 Update 4

What could be going on?

Please let me know if you need additional information.

Thanks for any assistance you can offer!

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5 Replies
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Moderator
49 Views

Hi Ben,

Can you please create a preprocess file of MCMCirtKdHet.cc  and submit it at http://supporttickets.intel.com?

Best regards,

Viet Hoang

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Beginner
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What was the upshot here? I have a support contract and can also submit a ticket, but if there's a known solution, I'd love to save the time.

A colleague of mine found the following -- same sort of issue and proposed solutions: https://stackoverflow.com/questions/36722505/installing-r-forecast-package-on-a-linux-cluster-compiler-issues

 

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Moderator
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Hi Ryan,

If you ran into the same issue, can you provide us a preprocess file to investigate? or you can submit a ticket at  http://supporttickets.intel.com

Thanks,

Viet

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Novice
49 Views

Hi Viet,

I don't have a support contract, so can't open a ticket, but I'm also encountering this issue and have attached a preprocess file.

Best

Ed

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Moderator
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Thank for the preprocessed file Ed. I've reported this case to our Developer (case number is CMPLRIL0-31371)

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