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It works fine when I work with preinstalled Intel kernels however I want to work with my own custom conda environment.
I am tring to submit job from jupyter notebook itself with following command:
%%qsub
cd $PBS_O_WORKDIR
python PythonDemo.py
which needs "import cfxmagic" before it. I have tried pip install cfxmagic and conda install cfxmagic but both didn't work. kindly show me how to work with it directly from jupyter notebook with custom environment. Thankyou.
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Any updates?
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hi Aditya
if you just want to run your own python file as a job, here is one way I do it.
# Create script to run my_ownpython.py
Write_script("pathTo/runmy_python.sh", "python3 python/pathTo/my_ownpython.py")
# Run the script
job_id = !qsub pathTo/runmy_python.sh -l nodes=1:idc001skl:i5-6500te
if job_id:
print(job_id[0])
progressIndicator('results/', job_id[0]+'.txt', "Inference", 0, 100)
I know we do support your own python package installation in condo environment,
did you try pip3 install nameofyourPackage ?
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