Error running docker compose tutorial for Edge_Insights_for_Autonomous_Mobile_Robots_2022.3.1

[aa53]

Error occur at step 6 of the tutorial in this link, https://www.intel.com/content/www/us/en/docs/ei-for-amr/get-started-guide-robot-kit/2022-3/step-6-run-a-ros-2-sample-application-in-the.html.

What can i do to resolve it?

1.Error summary:

ERROR [nav2-pre 5/9] RUN chmod +x -R /home/eiforamr/ros2_ws/install/its_planner 15.4s
------
updated cache in /root/.ros/rosdep/sources.cache
rosdep install -i --from-path src/navigation2 --rosdistro foxy -y
WARNING: ROS_PYTHON_VERSION is unset. Defaulting to 3
ERROR: the following packages/stacks could not have their rosdep keys resolved to system dependencies

Is there missing dependencies in the ros-base docker image?

Have not modified the docker-compose .yml file and the .env file.

2. Full error log as follow:

[+] Running 1/1
! ros-base Warning 3.1s
[+] Building 19.7s (23/96)
=> [internal] load build definition from dockerfile.amr 0.0s
=> => transferring dockerfile: 37B 0.0s
=> [internal] load .dockerignore 0.0s
=> => transferring context: 2B 0.0s
=> resolve image config for docker.io/edrevo/dockerfile-plus:0.1.0 1.5s
=> CACHED docker-image://docker.io/edrevo/dockerfile-plus:0.1.0@sha256:d234bd015db8acef1e628e 0.0s
=> local://dockerfile 0.1s
=> => transferring dockerfile: 472.27kB 0.1s
=> local://context 0.1s
=> => transferring context: 472.27kB 0.1s
=> [internal] load metadata for docker.io/intel/oneapi-basekit:2022.2-devel-ubuntu20.04 1.0s
=> [internal] load metadata for docker.io/library/ros:foxy@sha256:e3c69b153f898d03cf307787523 0.0s
=> [internal] load build context 0.0s
=> => transferring context: 63.89kB 0.0s
=> [ros-base-pre 1/9] FROM docker.io/library/ros:foxy@sha256:e3c69b153f898d03cf30778752337e13 0.0s
=> CANCELED [oneapi_base 1/1] FROM docker.io/intel/oneapi-basekit:2022.2-devel-ubuntu20.04@s 15.5s
=> => resolve docker.io/intel/oneapi-basekit:2022.2-devel-ubuntu20.04@sha256:9b0301695e073f8e 0.0s
=> => sha256:9b0301695e073f8eb22d3ca5401455f37ea98c744e35ac8901c98b87a3f567ae 2.41kB / 2.41kB 0.0s
=> => sha256:d5fd17ec1767521cf97f61568096bfc9a7cd9c2d149576a7b43930c5a97062 28.57MB / 28.57MB 1.4s
=> => sha256:a312cb27ead7749a101ab75ba45d3486f11cca1d95bd7b473abee16b18f9d9 45.30MB / 45.30MB 2.4s
=> => sha256:8cbd75c3dbf7d15f693cd35148f0046cc755d08eb4640eaff05908992b01b1 27.97kB / 27.97kB 0.0s
=> => sha256:aa3d94bd2fc1ccd08db4b52e9528aff8ff6e7eefc49774ccdc9f9a8692d8a1 44.80kB / 44.80kB 0.6s
=> => sha256:c73cf61a50e8d1dabdcee1a5540dcdf6a006c1f856d7ffc93870de01ff6c74d2 2.70kB / 2.70kB 0.9s
=> => sha256:5e777f591ecbe814e57940954f74f22945493c683fe2fb098f76cff38860aa77 236B / 236B 1.2s
=> => sha256:ddc080685bc657d1d00a558b4e020c86cff12335c105c4d4c7cd08b2e15b34f3 350B / 350B 1.5s
=> => sha256:7dac4f73818af4f7cbb59abb8e83a69e821379f32c350f21c8e490a1524ddf94 3.91kB / 3.91kB 1.6s
=> => extracting sha256:d5fd17ec1767521cf97f61568096bfc9a7cd9c2d149576a7b43930c5a97062b0 1.2s
=> => sha256:03140a46280453c9f2ad1ae39ff4032df91b9cd1cd3cb664f5df12e38b745d83 249B / 249B 1.8s
=> => sha256:8289312284ffe5094f51daf38a6771f0200778c88bc1e7d5a9a9feabc5f14 553.65MB / 5.94GB 15.4s
=> => sha256:74c223fd977a8a7dceaa3dbdd1c25ef79d7946aba84d399ef58c885e9d21d9 46.82MB / 46.82MB 4.1s
=> => extracting sha256:aa3d94bd2fc1ccd08db4b52e9528aff8ff6e7eefc49774ccdc9f9a8692d8a102 0.0s
=> => extracting sha256:a312cb27ead7749a101ab75ba45d3486f11cca1d95bd7b473abee16b18f9d97d 2.1s
=> => extracting sha256:c73cf61a50e8d1dabdcee1a5540dcdf6a006c1f856d7ffc93870de01ff6c74d2 0.0s
=> => extracting sha256:5e777f591ecbe814e57940954f74f22945493c683fe2fb098f76cff38860aa77 0.0s
=> => extracting sha256:ddc080685bc657d1d00a558b4e020c86cff12335c105c4d4c7cd08b2e15b34f3 0.0s
=> => extracting sha256:7dac4f73818af4f7cbb59abb8e83a69e821379f32c350f21c8e490a1524ddf94 0.0s
=> => extracting sha256:03140a46280453c9f2ad1ae39ff4032df91b9cd1cd3cb664f5df12e38b745d83 0.0s
=> CACHED [ros-base-pre 2/9] RUN useradd --create-home --shell /bin/bash --gid root --uid 987 0.0s
=> CACHED [ros-base-pre 3/9] COPY artifacts/01_amr/multimedia/* /home/eiforamr/data_samples/m 0.0s
=> CACHED [ros-base-pre 4/9] RUN chmod 777 -R /home/eiforamr/data_samples/media_samples & 0.0s
=> CACHED [ros-base-pre 5/9] RUN apt-get update && apt-get upgrade --no-install-recommends -q 0.0s
=> CACHED [ros-base-pre 6/9] WORKDIR /home/eiforamr/workspace 0.0s
=> CACHED [ros-base-pre 7/9] COPY artifacts/01_amr/docker_entrypoint.sh ../ 0.0s
=> CACHED [ros-base-pre 8/9] COPY artifacts/01_amr/source_prebuilt_components.sh /home/eifora 0.0s
=> CACHED [ros-base-pre 9/9] RUN rm -rf /root/.cache 0.0s
=> CACHED [nav2-pre 1/9] WORKDIR /home/eiforamr/ros2_ws 0.0s
=> CACHED [nav2-pre 2/9] RUN git clone -b foxy-devel https://github.com/ros-planning/navigati 0.0s
=> CACHED [nav2-pre 3/9] COPY artifacts/01_amr/nav2/* src/navigation2/ 0.0s
=> CACHED [nav2-pre 4/9] COPY artifacts/01_amr/amr_its_planner/install/its_planner /home/eifo 0.0s
=> ERROR [nav2-pre 5/9] RUN chmod +x -R /home/eiforamr/ros2_ws/install/its_planner 15.4s
------
> [nav2-pre 5/9] RUN chmod +x -R /home/eiforamr/ros2_ws/install/its_planner && cd src/navigation2 && git checkout 60043d4067b9dbff73be65291f5df6aaa286cc61 && git apply 0001-Catch-send_goal-failed-exception.patch && git apply 0001-Fix-action-node-in-endless-loop.patch && git apply 0001-Wait-for-valid-costmap-before-computing-trajectory.patch && git apply 0001-Backport-fix-for-straight-path-issue.patch && cd /home/eiforamr/ros2_ws && apt-get update && rosdep update && rosdep install -i --from-path src/navigation2 --rosdistro foxy -y && source /opt/ros/foxy/setup.bash && colcon build && rm -rf /home/eiforamr/ros2_ws/build/* /home/eiforamr/ros2_ws/src/* /home/eiforamr/ros2_ws/log/*:
#0 0.236 + chmod +x -R /home/eiforamr/ros2_ws/install/its_planner
#0 0.308 + cd src/navigation2
#0 0.308 + git checkout 60043d4067b9dbff73be65291f5df6aaa286cc61
#0 0.502 Note: switching to '60043d4067b9dbff73be65291f5df6aaa286cc61'.
#0 0.502
#0 0.502 You are in 'detached HEAD' state. You can look around, make experimental
#0 0.502 changes and commit them, and you can discard any commits you make in this
#0 0.502 state without impacting any branches by switching back to a branch.
#0 0.502
#0 0.502 If you want to create a new branch to retain commits you create, you may
#0 0.502 do so (now or later) by using -c with the switch command. Example:
#0 0.502
#0 0.502 git switch -c <new-branch-name>
#0 0.502
#0 0.502 Or undo this operation with:
#0 0.502
#0 0.502 git switch -
#0 0.502
#0 0.502 Turn off this advice by setting config variable advice.detachedHead to false
#0 0.502
#0 0.502 HEAD is now at 60043d40 Fix for costmap nodes lifecycle status (#3005)
#0 0.502 + git apply 0001-Catch-send_goal-failed-exception.patch
#0 0.504 + git apply 0001-Fix-action-node-in-endless-loop.patch
#0 0.505 0001-Fix-action-node-in-endless-loop.patch:31: trailing whitespace.
#0 0.505 node_->get_logger(),
#0 0.505 warning: 1 line adds whitespace errors.
#0 0.506 + git apply 0001-Wait-for-valid-costmap-before-computing-trajectory.patch
#0 0.507 0001-Wait-for-valid-costmap-before-computing-trajectory.patch:43: trailing whitespace.
#0 0.507
#0 0.507 warning: 1 line adds whitespace errors.
#0 0.508 + git apply 0001-Backport-fix-for-straight-path-issue.patch
#0 0.511 + cd /home/eiforamr/ros2_ws
#0 0.511 + apt-get update
#0 0.927 Get:1 http://packages.ros.org/ros2/ubuntu focal InRelease [4685 B]
#0 1.140 Get:2 http://archive.ubuntu.com/ubuntu focal InRelease [265 kB]
#0 1.140 Get:3 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB]
#0 1.233 Get:4 http://packages.ros.org/ros2/ubuntu focal/main amd64 Packages [1189 kB]
#0 2.176 Get:5 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [1072 kB]
#0 2.358 Get:6 http://archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB]
#0 2.646 Get:7 http://archive.ubuntu.com/ubuntu focal-backports InRelease [108 kB]
#0 2.946 Get:8 http://archive.ubuntu.com/ubuntu focal/main amd64 Packages [1275 kB]
#0 3.270 Get:9 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [2536 kB]
#0 3.644 Get:10 http://archive.ubuntu.com/ubuntu focal/universe amd64 Packages [11.3 MB]
#0 3.718 Get:11 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [29.3 kB]
#0 3.718 Get:12 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [2866 kB]
#0 4.714 Get:13 http://archive.ubuntu.com/ubuntu focal/multiverse amd64 Packages [177 kB]
#0 4.729 Get:14 http://archive.ubuntu.com/ubuntu focal/restricted amd64 Packages [33.4 kB]
#0 4.729 Get:15 http://archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [2677 kB]
#0 4.909 Get:16 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [1372 kB]
#0 4.993 Get:17 http://archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [32.0 kB]
#0 4.995 Get:18 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [3347 kB]
#0 5.756 Get:19 http://archive.ubuntu.com/ubuntu focal-backports/universe amd64 Packages [28.6 kB]
#0 6.245 Get:20 http://archive.ubuntu.com/ubuntu focal-backports/main amd64 Packages [55.2 kB]
#0 6.526 Fetched 28.6 MB in 6s (4777 kB/s)
#0 6.526 Reading package lists...
#0 7.399 + rosdep update
#0 12.70 Warning: running 'rosdep update' as root is not recommended.
#0 12.70 You should run 'sudo rosdep fix-permissions' and invoke 'rosdep update' again without sudo.
#0 12.70 reading in sources list data from /etc/ros/rosdep/sources.list.d
#0 12.70 Hit https://raw.githubusercontent.com/ros/rosdistro/master/rosdep/osx-homebrew.yaml
#0 12.70 Hit https://raw.githubusercontent.com/ros/rosdistro/master/rosdep/base.yaml
#0 12.70 Hit https://raw.githubusercontent.com/ros/rosdistro/master/rosdep/python.yaml
#0 12.70 Hit https://raw.githubusercontent.com/ros/rosdistro/master/rosdep/ruby.yaml
#0 12.70 Hit https://raw.githubusercontent.com/ros/rosdistro/master/releases/fuerte.yaml
#0 12.70 Query rosdistro index https://raw.githubusercontent.com/ros/rosdistro/master/index-v4.yaml
#0 12.70 Skip end-of-life distro "ardent"
#0 12.70 Skip end-of-life distro "bouncy"
#0 12.70 Skip end-of-life distro "crystal"
#0 12.70 Skip end-of-life distro "dashing"
#0 12.70 Skip end-of-life distro "eloquent"
#0 12.70 Skip end-of-life distro "foxy"
#0 12.70 Skip end-of-life distro "galactic"
#0 12.70 Skip end-of-life distro "groovy"
#0 12.70 Add distro "humble"
#0 12.70 Skip end-of-life distro "hydro"
#0 12.70 Skip end-of-life distro "indigo"
#0 12.70 Add distro "iron"
#0 12.70 Skip end-of-life distro "jade"
#0 12.70 Skip end-of-life distro "kinetic"
#0 12.70 Skip end-of-life distro "lunar"
#0 12.70 Skip end-of-life distro "melodic"
#0 12.70 Add distro "noetic"
#0 12.70 Add distro "rolling"
#0 12.70 updated cache in /root/.ros/rosdep/sources.cache
#0 12.73 + rosdep install -i --from-path src/navigation2 --rosdistro foxy -y
#0 14.01 WARNING: ROS_PYTHON_VERSION is unset. Defaulting to 3
#0 14.01 ERROR: the following packages/stacks could not have their rosdep keys resolved
#0 14.01 to system dependencies:
#0 14.01 nav2_map_server: Cannot locate rosdep definition for [launch_testing]
#0 14.01 nav2_regulated_pure_pursuit_controller: Cannot locate rosdep definition for [ament_lint_auto]
#0 14.01 dwb_plugins: Cannot locate rosdep definition for [ament_cmake_gtest]
#0 14.01 dwb_critics: Cannot locate rosdep definition for [ament_lint_auto]
#0 14.01 nav2_gazebo_spawner: Cannot locate rosdep definition for [ament_copyright]
#0 14.01 nav_2d_utils: Cannot locate rosdep definition for [ament_lint_auto]
#0 14.01 navigation2: Cannot locate rosdep definition for [ament_cmake]
#0 14.01 nav2_rviz_plugins: Cannot locate rosdep definition for [ament_lint_auto]
#0 14.01 nav2_common: Cannot locate rosdep definition for [rclpy]
#0 14.01 nav2_system_tests: Cannot locate rosdep definition for [launch_testing]
#0 14.01 dwb_msgs: Cannot locate rosdep definition for [rosidl_default_runtime]
#0 14.01 nav2_lifecycle_manager: Cannot locate rosdep definition for [ament_lint_common]
#0 14.01 nav2_core: Cannot locate rosdep definition for [launch_testing]
#0 14.01 nav2_bt_navigator: Cannot locate rosdep definition for [ament_lint_auto]
#0 14.01 nav2_dwb_controller: Cannot locate rosdep definition for [ament_cmake]
#0 14.01 nav2_behavior_tree: Cannot locate rosdep definition for [ament_lint_auto]
#0 14.01 nav_2d_msgs: Cannot locate rosdep definition for [rosidl_default_generators]
#0 14.01 nav2_msgs: Cannot locate rosdep definition for [nav_msgs]
#0 14.01 nav2_voxel_grid: Cannot locate rosdep definition for [ament_cmake_gtest]
#0 14.01 nav2_costmap_2d: Cannot locate rosdep definition for [launch_testing]
#0 14.01 nav2_util: Cannot locate rosdep definition for [action_msgs]
#0 14.01 nav2_controller: Cannot locate rosdep definition for [ament_lint_auto]
#0 14.01 dwb_core: Cannot locate rosdep definition for [ament_lint_auto]
#0 14.01 nav2_waypoint_follower: Cannot locate rosdep definition for [ament_lint_auto]
#0 14.01 nav2_bringup: Cannot locate rosdep definition for [launch_testing]
#0 14.01 smac_planner: Cannot locate rosdep definition for [ament_lint_auto]
#0 14.01 nav2_planner: Cannot locate rosdep definition for [ament_lint_auto]
#0 14.01 nav2_navfn_planner: Cannot locate rosdep definition for [ament_lint_auto]
#0 14.01 nav2_recoveries: Cannot locate rosdep definition for [ament_cmake_gtest]
#0 14.01 costmap_queue: Cannot locate rosdep definition for [ament_cmake_gtest]
#0 14.01 nav2_amcl: Cannot locate rosdep definition for [ament_lint_auto]
------
failed to solve: executor failed running [/bin/bash -xo pipefail -c chmod +x -R ${ROS2_WS}/install/its_planner && cd src/navigation2 && git checkout ${NAVIGATION2_COMMIT_ID} && git apply 0001-Catch-send_goal-failed-exception.patch && git apply 0001-Fix-action-node-in-endless-loop.patch && git apply 0001-Wait-for-valid-costmap-before-computing-trajectory.patch && git apply 0001-Backport-fix-for-straight-path-issue.patch && cd ${ROS2_WS} && apt-get update && rosdep update && rosdep install -i --from-path src/navigation2 --rosdistro $ROS_DISTRO -y && source ${ROS_INSTALL_DIR}/setup.bash && colcon build && rm -rf ${ROS2_WS}/build/* ${ROS2_WS}/src/* ${ROS2_WS}/log/*]: exit code: 1

[aa53]

UPDATE:

Getting the pre-built image from ./edgesoftware install is working fine.

Error still persist if trying to built it.

[Sahira_Intel]

Hi,

I am looking into this and will let you know when I have more information.

Sincerely,

Sahira

[JesusE_Intel · Accepted solution]

Hi aa53,

Would you be able to provide all the log files under the following directory?

/var/log/esb-cli/Edge_Insights_for_Autonomous_Mobile_Robots_<version>

You also mentioned that the package was successfully installed using ./edgesoftware install, is there a reason why you need to re-build the package from source?

Regards,

Jesus

[JesusE_Intel]

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