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New Contributor I
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Does anyone install scipy on edison successfully?

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Hi everyone

Dose anyone install scipy on edison successfully?

Based on Python 2.7 and yocto image 2.1

If you konw how to install it ,can you tell me how to do it or give me some guides?

Regards,

Chen


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Employee
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Hello cer1991,

I installed Numpy (a dependency of SciPy) using Python's pip command. First, you will need to install pip from AlexT's repo. You can find instructions on how to set the repo in http://alextgalileo.altervista.org/edison-package-repo-configuration-instructions.html Edison Package Repo Configuration Instructions.

After the repo is set up, you can install pip with the following command:

opkg update

opkg install python-pip

Then you can install NumPy with the command:

pip install numpy

Once NumPy is installed you can install SciPy, another user had issues installing it but he managed to resolve them, you can see the details in .

Let us know if it helps.

Peter.

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Employee
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Hello cer1991,

I installed Numpy (a dependency of SciPy) using Python's pip command. First, you will need to install pip from AlexT's repo. You can find instructions on how to set the repo in http://alextgalileo.altervista.org/edison-package-repo-configuration-instructions.html Edison Package Repo Configuration Instructions.

After the repo is set up, you can install pip with the following command:

opkg update

opkg install python-pip

Then you can install NumPy with the command:

pip install numpy

Once NumPy is installed you can install SciPy, another user had issues installing it but he managed to resolve them, you can see the details in .

Let us know if it helps.

Peter.

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New Contributor I
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Dear @Intel_Peter

Thank you for your help.

I have install 'pip' successfully , but when I install scipy,I meet some probelms as below:

root@myedison2:~# pip install scipy

Downloading/unpacking scipy

Downloading scipy-0.17.0.tar.gz (12.4MB): 12.4MB downloaded

Running setup.py egg_info for package scipy

warning: no previously-included files matching '*_subr_*.f' found under directory 'scipy/linalg/src/id_dist/src'

no previously-included directories found matching 'benchmarks/env'

no previously-included directories found matching 'benchmarks/results'

no previously-included directories found matching 'benchmarks/html'

no previously-included directories found matching 'benchmarks/scipy'

no previously-included directories found matching 'scipy/special/tests/data/boost'

no previously-included directories found matching 'scipy/special/tests/data/gsl'

no previously-included directories found matching 'doc/build'

no previously-included directories found matching 'doc/source/generated'

no previously-included directories found matching '*/__pycache__'

warning: no previously-included files matching '*~' found anywhere in distribution

warning: no previously-included files matching '*.bak' found anywhere in distribution

warning: no previously-included files matching '*.swp' found anywhere in distribution

warning: no previously-included files matching '*.pyo' found anywhere in distribution

Installing collected packages: scipy

Running setup.py install for scipy

lapack_opt_info:

lapack_mkl_info:

mkl_info:

libraries mkl,vml,guide not found in ['/usr/lib']

NOT AVAILABLE

NOT AVAILABLE

atlas_threads_info:

Setting PTATLAS=ATLAS

libraries ptf77blas,ptcblas,atlas not found in /usr/lib

libraries lapack_atlas not found in /usr/lib

numpy.distutils.system_info.atlas_threads_info

NOT AVAILABLE

atlas_info:

libraries f77blas,cblas,atlas not found in /usr/lib

libraries lapack_atlas not found in /usr/lib

numpy.distutils.system_info.atlas_info

NOT AVAILABLE

/usr/lib/python2.7/site-packages/numpy/distutils/system_info.py:1379: UserWarning:

Atlas (http://math-atlas.sourceforge.net/ http://math-atlas.sourceforge.net/) libraries not found.

Directories to search for the libraries can be specified in the

numpy/distutils/site.cfg file (section [atlas]) or by setting

the ATLAS environment variable.

warnings.warn(AtlasNotFoundError.__doc__)

lapack_info:

libraries lapack not found in ['/usr/lib']

NOT AVAILABLE

/usr/lib/python2.7/site-packages/numpy/distutils/system_info.py:1390: UserWarning:

Lapack (http://www.netlib.org/lapack/ http://www.netlib.org/lapack/) libraries not found.

Directories to search for the libraries can be specified in the

numpy/distutils/site.cfg file (section [lapack]) or by setting

the LAPACK environment variable.

warnings.warn(LapackNotFoundError.__doc__)

lapack_src_info:

NOT AVAILABLE

/usr/lib/python2.7/site-packages/numpy/distutils/system_info.py:1393: UserWarning:

Lapack (http://www.netlib.org/lapack/ http://www.netlib.org/lapack/) sources not found.

Directories to search for the sources can be specified in the

numpy/distutils/site.cfg file (section [lapack_src]) or by setting

the LAPACK_SRC environment variable.

warnings.warn(LapackSrcNotFoundError.__doc__)

NOT AVAILABLE

Running from scipy source directory.

Traceback (most recent call last):

File "", line 1, in

File "/tmp/pip-build-root/scipy/setup.py", line 265, in

setup_package()

File "/tmp/pip-build-root/scipy/setup.py", line 262, in setup_package

setup(**metadata)

File "/usr/lib/python2.7/site-packages/numpy/distutils/core.py", line 152, in setup

config = configuration()

File "/tmp/pip-build-root/scipy/setup.py", line 182, in configuration

config.add_subpackage('scipy')

File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage

caller_level = 2)

File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage

caller_level = caller_level + 1)

File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 909, in _get_configuration_from_setup_py

config = setup_module.configuration(*args)

File "scipy/setup.py", line 15, in configuration

config.add_subpackage('linalg')

File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage

caller_level = 2)

File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage

caller_level = caller_level + 1)

File "/usr/lib/python2.7/site-packages/numpy/distutils/misc_util.py", line 909, in _get_configuration_from_setup_py

config = setup_module.configuration(*args)

File "scipy/linalg/setup.py", line 20, in configuration

raise NotFoundError('no lapack/blas resources found')

numpy.distutils.system_info.NotFoundError: no lapack/blas resources found

Complete output from command /usr/bin/python -c "import setuptools;__file__='/tmp/pip-build-root/scipy/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-nv2x8g-record/install-record.txt --single-version-externally-managed:

lapack_opt_info:

lapack_mkl_info:

mkl_info:

libraries mkl,vml,guide not found in ['/usr/lib']

NOT AVAILABLE

</p...

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Employee
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I'd suggest you to contact scipy for a more accurate answer. You can contact them in:

https://groups.google.com/forum/# !forum/scipy-user SciPy Google Groups

https://scipy.github.io/old-wiki/pages/Mailing_Lists.html Mailing_Lists - SciPy wiki dump

Peter.

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