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Only the ed_sim directory with sub-dirs aldec, cadence, mentor, synopsys and tb_components are created with a total of 24 files.
I cant use Pro because I use IP that is NOT compatible with Pro.
Using :
Quartus Prime Version 17.0.2 Build 602 07/19/2017 SJ Standard Edition.
Quartus Prime Version 17.1.0 Build 240 10/25/2017 SJ Pro Edition.
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Are you trying to use the same project file or do you have two separate copies for each tool version?
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No common files/directories between the two builds.
The standard build was failing for days before I even tried using pro.

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