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2020 Discussions

Intel MPI unable to use 'ofa' fabric with Mellanox OFED on ConnectX-4 Lx EN ethernet cards

Jacob_H_
Beginner
‎06-20-2017 12:16 PM
621 Views

I have a system where I am unable to get Intel MPI to use the 'ofa' fabric with Mellanox OFED over ConnectX-4 Lx EN ethernet cards and have exhausted all means I know of to get it to work. I'd appreciate any input to help me to get this working.

Relevant info:

  • Operating System is CentOS 7.3
  • Intel(R) MPI Library for Linux* OS, Version 2017 Update 3 Build 20170405 (id: 17193)
  • NIC is a single Mellanox ConnectX-4 Lx EN ethernet-only card (RoCE v1 and v2 supported) with 2x25Gb ports 
    •  lspci | grep Mell
05:00.0 Ethernet controller: Mellanox Technologies MT27710 Family [ConnectX-4 Lx]
05:00.1 Ethernet controller: Mellanox Technologies MT27710 Family [ConnectX-4 Lx]
    •  ibv_devinfo
hca_id:	mlx5_1
	transport:			InfiniBand (0)
	fw_ver:				14.18.2000
	node_guid:			248a:0703:008d:6237
	sys_image_guid:			248a:0703:008d:6236
	vendor_id:			0x02c9
	vendor_part_id:			4117
	hw_ver:				0x0
	board_id:			MT_2420110034
	phys_port_cnt:			1
	Device ports:
		port:	1
			state:			PORT_ACTIVE (4)
			max_mtu:		4096 (5)
			active_mtu:		1024 (3)
			sm_lid:			0
			port_lid:		0
			port_lmc:		0x00
			link_layer:		Ethernet

hca_id:	mlx5_0
	transport:			InfiniBand (0)
	fw_ver:				14.18.2000
	node_guid:			248a:0703:008d:6236
	sys_image_guid:			248a:0703:008d:6236
	vendor_id:			0x02c9
	vendor_part_id:			4117
	hw_ver:				0x0
	board_id:			MT_2420110034
	phys_port_cnt:			1
	Device ports:
		port:	1
			state:			PORT_ACTIVE (4)
			max_mtu:		4096 (5)
			active_mtu:		1024 (3)
			sm_lid:			0
			port_lid:		0
			port_lmc:		0x00
			link_layer:		Ethernet
  • Mellanox OFED driver, output of 'ofed_info' is:
    • MLNX_OFED_LINUX-4.0-2.0.0.1 (OFED-4.0-2.0.0):
    • Verified RDMA is working via perftest utilities, e.g. ib_write_bw, ib_write_lat, etc.
  • Specified that ofa fabric should be used via the environment variable I_MPI_FABRICS=shm:ofa
    • Verified that using 'tcp' and 'dapl' fabrics works (had to manually add RoCE entries to the dat.conf to get dapl to work)
    • $ env | grep I_MPI
I_MPI_FABRICS=shm:ofa
I_MPI_HYDRA_DEBUG=on
I_MPI_DEBUG=6
I_MPI_ROOT=/opt/intel/psxe_runtime_2017.4.196/linux/mpi
  • Output when I try and run my code when 'ofa' is specified as the fabric for Intel MPI: 
    • mpirun -n 1 ./server
host: sp1.muskrat.local

==================================================================================================
mpiexec options:
----------------
  Base path: /opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/bin/
  Launcher: ssh
  Debug level: 1
  Enable X: -1

  Global environment:
  -------------------
    I_MPI_PERHOST=allcores
    LD_LIBRARY_PATH=/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/mic/lib:/opt/intel/psxe_runtime_2017.4.196/linux/daal/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/mkl/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/tbb/lib/intel64/gcc4.1:/opt/intel/psxe_runtime_2017.4.196/linux/ipp/lib/intel64:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/mic/lib:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/mic/lib:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/mic/lib
    MKLROOT=/opt/intel/psxe_runtime_2017.4.196/linux/mkl
    MANPATH=/opt/intel/psxe_runtime_2017.4.196/linux/mpi/man:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/man:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/man:/usr/local/share/man:/usr/share/man:/opt/ibutils/share/man
    I_MPI_DEBUG_HYDRA=0
    XDG_SESSION_ID=216
    HOSTNAME=sp1.muskrat.local
    SELINUX_ROLE_REQUESTED=
    IPPROOT=/opt/intel/psxe_runtime_2017.4.196/linux/ipp
    SHELL=/bin/bash
    TERM=xterm-256color
    HISTSIZE=1000
    I_MPI_FABRICS=shm:ofa
    SSH_CLIENT=192.168.1.2 33072 22
    LIBRARY_PATH=/opt/intel/psxe_runtime_2017.4.196/linux/daal/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/mkl/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/tbb/lib/intel64/gcc4.1:/opt/intel/psxe_runtime_2017.4.196/linux/ipp/lib/intel64:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin
    SELINUX_USE_CURRENT_RANGE=
    SSH_TTY=/dev/pts/1
    MIC_LD_LIBRARY_PATH=/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin_mic:/opt/intel/psxe_runtime_2017.4.196/linux/mkl/lib/intel64_lin_mic:/opt/intel/psxe_runtime_2017.4.196/linux/tbb/lib/mic:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/mic/lib:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin_mic:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/mic/lib:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin_mic
    USER=jrhemst
    LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arc=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lha=38;5;9:*.lz4=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.tzo=38;5;9:*.t7z=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lrz=38;5;9:*.lz=38;5;9:*.lzo=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.bz=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.war=38;5;9:*.ear=38;5;9:*.sar=38;5;9:*.rar=38;5;9:*.alz=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.cab=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.webm=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
    I_MPI_MPIRUN=mpirun
    MIC_LIBRARY_PATH=/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin_mic:/opt/intel/psxe_runtime_2017.4.196/linux/mkl/lib/intel64_lin_mic:/opt/intel/psxe_runtime_2017.4.196/linux/tbb/lib/mic
    CPATH=/opt/intel/psxe_runtime_2017.4.196/linux/daal/include:/opt/intel/psxe_runtime_2017.4.196/linux/mkl/include:/opt/intel/psxe_runtime_2017.4.196/linux/tbb/include:/opt/intel/psxe_runtime_2017.4.196/linux/ipp/include:
    NLSPATH=/opt/intel/psxe_runtime_2017.4.196/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin/locale/%l_%t/%N
    PATH=/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/bin:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/bin:/opt/intel/psxe_runtime_2017.4.196/linux/bin:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/bin:/opt/intel/psxe_runtime_2017.4.196/linux/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibutils/bin:/opt/puppetlabs/bin:/home/jrhemst/.local/bin:/home/jrhemst/bin
    MAIL=/var/spool/mail/jrhemst
    TBBROOT=/opt/intel/psxe_runtime_2017.4.196/linux/tbb
    PWD=/home/jrhemst/mpi_test
    I_MPI_HYDRA_DEBUG=on
    XMODIFIERS=@im=none
    EDITOR=vim
    LANG=en_US.UTF-8
    MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles
    LOADEDMODULES=
    SELINUX_LEVEL_REQUESTED=
    DAALROOT=/opt/intel/psxe_runtime_2017.4.196/linux/daal
    HISTCONTROL=ignoredups
    HOME=/home/jrhemst
    SHLVL=2
    I_MPI_DEBUG=6
    LOGNAME=jrhemst
    SSH_CONNECTION=192.168.1.2 33072 192.168.1.113 22
    CLASSPATH=/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib/mpi.jar:/opt/intel/psxe_runtime_2017.4.196/linux/daal/lib/daal.jar:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib/mpi.jar:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib/mpi.jar
    MODULESHOME=/usr/share/Modules
    LESSOPEN=||/usr/bin/lesspipe.sh %s
    XDG_RUNTIME_DIR=/run/user/1338400006
    I_MPI_ROOT=/opt/intel/psxe_runtime_2017.4.196/linux/mpi
    BASH_FUNC_module()=() {  eval `/usr/bin/modulecmd bash $*`
}
    _=/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/bin/mpiexec.hydra

  Hydra internal environment:
  ---------------------------
    MPIR_CVAR_NEMESIS_ENABLE_CKPOINT=1
    GFORTRAN_UNBUFFERED_PRECONNECTED=y
    I_MPI_HYDRA_UUID=7e590000-3bc9-185f-6852-05000171c0a8
    DAPL_NETWORK_PROCESS_NUM=1

  Intel(R) MPI Library specific variables:
  ----------------------------------------
    I_MPI_PERHOST=allcores
    I_MPI_DEBUG_HYDRA=0
    I_MPI_FABRICS=shm:ofa
    I_MPI_MPIRUN=mpirun
    I_MPI_HYDRA_DEBUG=on
    I_MPI_DEBUG=6
    I_MPI_ROOT=/opt/intel/psxe_runtime_2017.4.196/linux/mpi
    I_MPI_HYDRA_UUID=7e590000-3bc9-185f-6852-05000171c0a8


    Proxy information:
    *********************
      [1] proxy: sp1.muskrat.local (16 cores)
      Exec list: ./server (1 processes); 


==================================================================================================

[mpiexec@sp1.muskrat.local] Timeout set to -1 (-1 means infinite)
[mpiexec@sp1.muskrat.local] Got a control port string of sp1.muskrat.local:33538

Proxy launch args: /opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/bin/pmi_proxy --control-port sp1.muskrat.local:33538 --debug --pmi-connect alltoall --pmi-aggregate -s 0 --rmk user --launcher ssh --demux poll --pgid 0 --enable-stdin 1 --retries 10 --control-code 1079489000 --usize -2 --proxy-id 

Arguments being passed to proxy 0:
--version 3.2 --iface-ip-env-name MPIR_CVAR_CH3_INTERFACE_HOSTNAME --hostname sp1.muskrat.local --global-core-map 0,16,16 --pmi-id-map 0,0 --global-process-count 1 --auto-cleanup 1 --pmi-kvsname kvs_22910_0 --pmi-process-mapping (vector,(0,1,16)) --topolib ipl --ckpointlib blcr --ckpoint-prefix /tmp --ckpoint-preserve 1 --ckpoint off --ckpoint-num -1 --global-inherited-env 49 'I_MPI_PERHOST=allcores' 'LD_LIBRARY_PATH=/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/mic/lib:/opt/intel/psxe_runtime_2017.4.196/linux/daal/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/mkl/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/tbb/lib/intel64/gcc4.1:/opt/intel/psxe_runtime_2017.4.196/linux/ipp/lib/intel64:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/mic/lib:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/mic/lib:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/mic/lib' 'MKLROOT=/opt/intel/psxe_runtime_2017.4.196/linux/mkl' 'MANPATH=/opt/intel/psxe_runtime_2017.4.196/linux/mpi/man:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/man:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/man:/usr/local/share/man:/usr/share/man:/opt/ibutils/share/man' 'I_MPI_DEBUG_HYDRA=0' 'XDG_SESSION_ID=216' 'HOSTNAME=sp1.muskrat.local' 'SELINUX_ROLE_REQUESTED=' 'IPPROOT=/opt/intel/psxe_runtime_2017.4.196/linux/ipp' 'SHELL=/bin/bash' 'TERM=xterm-256color' 'HISTSIZE=1000' 'I_MPI_FABRICS=shm:ofa' 'SSH_CLIENT=192.168.1.2 33072 22' 'LIBRARY_PATH=/opt/intel/psxe_runtime_2017.4.196/linux/daal/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/mkl/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/tbb/lib/intel64/gcc4.1:/opt/intel/psxe_runtime_2017.4.196/linux/ipp/lib/intel64:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin' 'SELINUX_USE_CURRENT_RANGE=' 'SSH_TTY=/dev/pts/1' 'MIC_LD_LIBRARY_PATH=/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin_mic:/opt/intel/psxe_runtime_2017.4.196/linux/mkl/lib/intel64_lin_mic:/opt/intel/psxe_runtime_2017.4.196/linux/tbb/lib/mic:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/mic/lib:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin_mic:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/mic/lib:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin_mic' 'USER=jrhemst' 'LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arc=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lha=38;5;9:*.lz4=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.tzo=38;5;9:*.t7z=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lrz=38;5;9:*.lz=38;5;9:*.lzo=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.bz=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.war=38;5;9:*.ear=38;5;9:*.sar=38;5;9:*.rar=38;5;9:*.alz=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.cab=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.webm=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:' 'I_MPI_MPIRUN=mpirun' 'MIC_LIBRARY_PATH=/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin_mic:/opt/intel/psxe_runtime_2017.4.196/linux/mkl/lib/intel64_lin_mic:/opt/intel/psxe_runtime_2017.4.196/linux/tbb/lib/mic' 'CPATH=/opt/intel/psxe_runtime_2017.4.196/linux/daal/include:/opt/intel/psxe_runtime_2017.4.196/linux/mkl/include:/opt/intel/psxe_runtime_2017.4.196/linux/tbb/include:/opt/intel/psxe_runtime_2017.4.196/linux/ipp/include:' 'NLSPATH=/opt/intel/psxe_runtime_2017.4.196/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/psxe_runtime_2017.4.196/linux/compiler/lib/intel64_lin/locale/%l_%t/%N' 'PATH=/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/bin:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/bin:/opt/intel/psxe_runtime_2017.4.196/linux/bin:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/bin:/opt/intel/psxe_runtime_2017.4.196/linux/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibutils/bin:/opt/puppetlabs/bin:/home/jrhemst/.local/bin:/home/jrhemst/bin' 'MAIL=/var/spool/mail/jrhemst' 'TBBROOT=/opt/intel/psxe_runtime_2017.4.196/linux/tbb' 'PWD=/home/jrhemst/mpi_test' 'I_MPI_HYDRA_DEBUG=on' 'XMODIFIERS=@im=none' 'EDITOR=vim' 'LANG=en_US.UTF-8' 'MODULEPATH=/usr/share/Modules/modulefiles:/etc/modulefiles' 'LOADEDMODULES=' 'SELINUX_LEVEL_REQUESTED=' 'DAALROOT=/opt/intel/psxe_runtime_2017.4.196/linux/daal' 'HISTCONTROL=ignoredups' 'HOME=/home/jrhemst' 'SHLVL=2' 'I_MPI_DEBUG=6' 'LOGNAME=jrhemst' 'SSH_CONNECTION=192.168.1.2 33072 192.168.1.113 22' 'CLASSPATH=/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib/mpi.jar:/opt/intel/psxe_runtime_2017.4.196/linux/daal/lib/daal.jar:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib/mpi.jar:/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/lib/mpi.jar' 'MODULESHOME=/usr/share/Modules' 'LESSOPEN=||/usr/bin/lesspipe.sh %s' 'XDG_RUNTIME_DIR=/run/user/1338400006' 'I_MPI_ROOT=/opt/intel/psxe_runtime_2017.4.196/linux/mpi' 'BASH_FUNC_module()=() {  eval `/usr/bin/modulecmd bash $*`
}' '_=/opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/bin/mpiexec.hydra' --global-user-env 0 --global-system-env 4 'MPIR_CVAR_NEMESIS_ENABLE_CKPOINT=1' 'GFORTRAN_UNBUFFERED_PRECONNECTED=y' 'I_MPI_HYDRA_UUID=7e590000-3bc9-185f-6852-05000171c0a8' 'DAPL_NETWORK_PROCESS_NUM=1' --proxy-core-count 16 --mpi-cmd-env mpirun -n 1 ./server  --exec --exec-appnum 0 --exec-proc-count 1 --exec-local-env 0 --exec-wdir /home/jrhemst/mpi_test --exec-args 1 ./server 

[mpiexec@sp1.muskrat.local] Launch arguments: /opt/intel/psxe_runtime_2017.4.196/linux/mpi/intel64/bin/pmi_proxy --control-port sp1.muskrat.local:33538 --debug --pmi-connect alltoall --pmi-aggregate -s 0 --rmk user --launcher ssh --demux poll --pgid 0 --enable-stdin 1 --retries 10 --control-code 1079489000 --usize -2 --proxy-id 0 
[proxy:0:0@sp1.muskrat.local] Start PMI_proxy 0
[proxy:0:0@sp1.muskrat.local] STDIN will be redirected to 1 fd(s): 17 
[proxy:0:0@sp1.muskrat.local] got pmi command (from 12): init
pmi_version=1 pmi_subversion=1 
[proxy:0:0@sp1.muskrat.local] PMI response: cmd=response_to_init pmi_version=1 pmi_subversion=1 rc=0
[proxy:0:0@sp1.muskrat.local] got pmi command (from 12): get_maxes

[proxy:0:0@sp1.muskrat.local] PMI response: cmd=maxes kvsname_max=256 keylen_max=64 vallen_max=1024
[proxy:0:0@sp1.muskrat.local] got pmi command (from 12): barrier_in

[proxy:0:0@sp1.muskrat.local] forwarding command (cmd=barrier_in) upstream
[mpiexec@sp1.muskrat.local] [pgid: 0] got PMI command: cmd=barrier_in
[mpiexec@sp1.muskrat.local] PMI response to fd 8 pid 12: cmd=barrier_out
[proxy:0:0@sp1.muskrat.local] PMI response: cmd=barrier_out
[proxy:0:0@sp1.muskrat.local] got pmi command (from 12): get_ranks2hosts

[proxy:0:0@sp1.muskrat.local] PMI response: put_ranks2hosts 26 1
17 sp1.muskrat.local 0, 
[proxy:0:0@sp1.muskrat.local] got pmi command (from 12): get_appnum

[proxy:0:0@sp1.muskrat.local] PMI response: cmd=appnum appnum=0
[proxy:0:0@sp1.muskrat.local] got pmi command (from 12): get_my_kvsname

[proxy:0:0@sp1.muskrat.local] PMI response: cmd=my_kvsname kvsname=kvs_22910_0
[proxy:0:0@sp1.muskrat.local] got pmi command (from 12): get_my_kvsname

[proxy:0:0@sp1.muskrat.local] PMI response: cmd=my_kvsname kvsname=kvs_22910_0
[0] MPI startup(): Intel(R) MPI Library, Version 2017 Update 3  Build 20170405 (id: 17193)
[0] MPI startup(): Copyright (C) 2003-2017 Intel Corporation.  All rights reserved.
[0] MPI startup(): Multi-threaded optimized library
[proxy:0:0@sp1.muskrat.local] got pmi command (from 12): barrier_in

[proxy:0:0@sp1.muskrat.local] forwarding command (cmd=barrier_in) upstream
[mpiexec@sp1.muskrat.local] [pgid: 0] got PMI command: cmd=barrier_in
[mpiexec@sp1.muskrat.local] PMI response to fd 8 pid 12: cmd=barrier_out
[proxy:0:0@sp1.muskrat.local] PMI response: cmd=barrier_out
[0] MPI startup(): Found 2 IB devices
[0] MPI startup(): Open 0 IB device: mlx5_1
[0] MPI startup(): Open 1 IB device: mlx5_0
[proxy:0:0@sp1.muskrat.local] got pmi command (from 12): put
kvsname=kvs_22910_0 key=OFA_Init_fail value=1 
[proxy:0:0@sp1.muskrat.local] PMI response: cmd=put_result rc=0 msg=success
[proxy:0:0@sp1.muskrat.local] forwarding command (cmd=put kvsname=kvs_22910_0 key=OFA_Init_fail value=1) upstream
[mpiexec@sp1.muskrat.local] [pgid: 0] got PMI command: cmd=put kvsname=kvs_22910_0 key=OFA_Init_fail value=1
[0] MPI startup(): ofa fabric is not available and fallback fabric is not enabled

       

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Ralf_U_
Beginner
‎08-07-2018 07:54 AM
621 Views

Did you ever get this to work? We would be quite interested in a solution.

best, Ralf

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Stephen_Behling
Beginner
‎05-20-2019 09:13 AM
621 Views

I found that I had to add:

export I_MPI_OFA_NUM_ADAPTERS=1
export I_MPI_OFA_ADAPTER_NAME="mlx5_0"
 

when using nodes with two IB adapters and using I_MPI_FABRICS=OFA.  While DAPL did not have problems, OFA seems to get confused. 

I am using Intel MPI 2018.1.163

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