Intel oneAPI with Podman

[ugiwgh]

Hi,

I have send email to supportreplies@intel.com with my wugh@paratera.com. Do you recieve it?

The email msg as following .

--------------------------------

I'm sorry. In intel/oneapi-hpckit:devel-ubuntu20.04 container, I cd to /opt/intel/oneapi/mpi/2021.6.0/test directory. And mpicc test.c, but when I execute ./a.out, it's Segmentation fault.

So the image has something wrong. I could provide the dockerfile.

centos.oneapi.dockerfile

---------- FILE START ----------

FROM docker.io/library/centos:centos7.9.2009

RUN yum install -y wget make rsync gcc gcc-c++

WORKDIR /root

ADD l_BaseKit_p_2022.1.2.146_offline.sh .

RUN bash l_BaseKit_p_2022.1.2.146_offline.sh -a -s --eula accept --components intel.oneapi.lin.mkl.devel && rm -rf l_BaseKit_p_2022.1.2.146_offline.sh

ADD l_HPCKit_p_2022.1.2.117_offline.sh .

RUN bash l_HPCKit_p_2022.1.2.117_offline.sh -a -s --eula accept --components intel.oneapi.lin.ifort-compiler:intel.oneapi.lin.dpcpp-cpp-compiler-pro:intel.oneapi.lin.mpi.devel && rm -rf l_HPCKit_p_2022.1.2.117_offline.sh

ENV MKLROOT=/opt/intel/oneapi/mkl/2022.0.2

ENV PATH=/opt/intel/oneapi/mpi/2021.5.1//libfabric/bin:/opt/intel/oneapi/mpi/2021.5.1//bin:/opt/intel/oneapi/mkl/2022.0.2/bin/intel64:/opt/intel/oneapi/dev-utilities/2021.5.2/bin:/opt/intel/oneapi/debugger/2021.5.0/gdb/intel64/bin:/opt/intel/oneapi/compiler/2022.0.2/linux/lib/oclfpga/bin:/opt/intel/oneapi/compiler/2022.0.2/linux/bin/intel64:/opt/intel/oneapi/compiler/2022.0.2/linux/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/vasp.5.4.4/bin

ENV LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.5.1/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.5.1//libfabric/lib:/opt/intel/oneapi/mpi/2021.5.1//lib/release:/opt/intel/oneapi/mpi/2021.5.1//lib:/opt/intel/oneapi/mkl/2022.0.2/lib/intel64:/opt/intel/oneapi/compiler/2022.0.2/linux/compiler/lib/intel64_lin:/opt/intel/oneapi/compiler/2022.0.2/linux/lib

ENV LD_LIBRARY_PATH=/opt/intel/oneapi/tbb/2021.5.1/env/../lib/intel64/gcc4.8:/opt/intel/oneapi/mpi/2021.5.1//libfabric/lib:/opt/intel/oneapi/mpi/2021.5.1//lib/release:/opt/intel/oneapi/mpi/2021.5.1//lib:/opt/intel/oneapi/mkl/2022.0.2/lib/intel64:/opt/intel/oneapi/debugger/2021.5.0/gdb/intel64/lib:/opt/intel/oneapi/debugger/2021.5.0/libipt/intel64/lib:/opt/intel/oneapi/debugger/2021.5.0/dep/lib:/opt/intel/oneapi/compiler/2022.0.2/linux/lib:/opt/intel/oneapi/compiler/2022.0.2/linux/lib/x64:/opt/intel/oneapi/compiler/2022.0.2/linux/lib/oclfpga/host/linux64/lib:/opt/intel/oneapi/compiler/2022.0.2/linux/compiler/lib/intel64_lin

ENV I_MPI_ROOT=/opt/intel/oneapi/mpi/2021.5.1

ENV FI_PROVIDER_PATH=/opt/intel/oneapi/mpi/2021.5.1//libfabric/lib/prov:/usr/lib64/libfabric

CMD source /opt/intel/oneapi/setvars.sh

---------- FILE END ----------

On my host Intel MPI version is

$ mpirun --version

Intel(R) MPI Library for Linux* OS, Version 2021.5 Build 20211102 (id: 9279b7d62)

$ mpirun -np 2 ./mpitest

Hello world: rank 0 of 2 running on ga2210.para.bscc

Hello world: rank 1 of 2 running on ga2210.para.bscc

$ mpirun -np 2 podman run --env-host --env-file envfile --userns=keep-id --network=host --pid=host --ipc=host -v .:/export:z 273b79f14177 /export/mpitest

[cli_0]: write_line error; fd=9 buf=:cmd=init pmi_version=1 pmi_subversion=1

:

system msg for write_line failure : Bad file descriptor

[cli_0]: Unable to write to PMI_fd

[cli_0]: write_line error; fd=9 buf=:cmd=get_appnum

:

system msg for write_line failure : Bad file descriptor

Abort(1090575) on node 0 (rank 0 in comm 0): Fatal error in PMPI_Init: Other MPI error, error stack:

MPIR_Init_thread(143):

MPID_Init(1221)......:

MPIR_pmi_init(130)...: PMI_Get_appnum returned -1

[cli_0]: write_line error; fd=9 buf=:cmd=abort exitcode=1090575

:

system msg for write_line failure : Bad file descriptor

Attempting to use an MPI routine before initializing MPICH

[cli_1]: write_line error; fd=10 buf=:cmd=init pmi_version=1 pmi_subversion=1

:

system msg for write_line failure : Bad file descriptor

[cli_1]: Unable to write to PMI_fd

[cli_1]: write_line error; fd=10 buf=:cmd=get_appnum

:

system msg for write_line failure : Bad file descriptor

Abort(1090575) on node 0 (rank 0 in comm 0): Fatal error in PMPI_Init: Other MPI error, error stack:

MPIR_Init_thread(143):

MPID_Init(1221)......:

MPIR_pmi_init(130)...: PMI_Get_appnum returned -1

[cli_1]: write_line error; fd=10 buf=:cmd=abort exitcode=1090575

:

system msg for write_line failure : Bad file descriptor

Attempting to use an MPI routine before initializing MPICH

Thanks & Regards,

GHui

[HemanthCH_Intel]

Hi,

Thank you for posting in Intel Communities.

As you are facing issues to respond to the existing post in the Intel communities. So, we have contacted you privately, please check your inbox and respond back to us.

Thanks & Regards,

Hemanth.

[HemanthCH_Intel]

Hi,

As we are communicating internally through emails, Since this is a duplicate thread of https://community.intel.com/t5/Intel-oneAPI-HPC-Toolkit/Re-Intel-oneAPI-with-Podman/m-p/1394023#M9611, we will no longer monitor this thread. We will continue addressing this issue in the other thread

Thanks & Regards,

Hemanth