mkl library error with scipy and numpy installed

02:35 AM

The issues: Missing patches, I guess : There are 9 patches for '1.2.7p1'.
( You can read the file mpich-el5.spec, to know the used options, flags.)

# yum install fdupes gdb gcc-gfortran xz
ftp://ftp.pbone.net/mirror/www.pclin...os2010.src.rpm
rpm -Uvh mpich-1.2.7p1-1pclos2010.src.rpm
cd /SOURCE/
xz -d mpich-1.2.7p1.tar.xz

rpmbuild -bb mpich-el5.spec : No errors, the packages are created ..
mpich-1.2.7p1-1.el5.i386.rpm , mpich-devel-1.2.7p1-1.el5.i386.rpm

cd /opt/ && ls -R mpich/ | wc 851 826 : All files are present.
( Please ask, if you want to download the packages, i386 or x86_64.)
EDIT : Sorry, I overlooked that you have x86_64.
..

aksharb · 10-08-11, 03:04 PM

thanks for help. Unfortunately i am just user. so cant use yum . i have to install it in my home dir only. what is the solution?

knudfl · 10-08-11, 07:04 PM

OK, may not work without the dependencies. You can of course check with
'rpm -qa | grep ' to know, if they are already installed.

RPM packages are usually created in /home//rpms/* : See post #13 here
http://www.linuxquestions.org/questi...1-a-766486/#13

This package, mpich-1.2.7p1-EL5.x86_64.tar.bz2 is the content of
mpich-1.2.7p1-1.el5.x86_64.rpm + mpich-devel-1.2.7p1-1.el5.x86_64.rpm.

'tar xvf mpich-1.2.7p1-EL5.x86_64.tar.bz2' : And you have all the files.
>> https://docs.google.com/uc?id=0B7S25...nload&hl=en_US

.

aksharb · 10-16-11, 07:23 PM

thanks for the help.
Please let me know how i can use mpich-1.2.7p1-EL5.x86_64.tar.bz2 directly in use? I am normal user and dont have any rights to install/upgarde any rpms.

can you brief on the procedure right from scratch to install the patched/(patches) source.

knudfl · Yesterday, 03:49 AM

Using the files in the tarball mpich-1.2.7p1-EL5.x86_64.tar.bz2:
Unpack to e.g. /home//opt/mpich/***
Edit mpif90 to your paths. Example "mpif90 command" :
./opt/mpich/ch-p4/bin/mpif90 -

Requirements : The binary f95 must be in your path. Default is /usr/bin/f95
.....

Building mpich-1.2.7p1 manually, patches included :
No libmpichf90.a is created. ( At least I got none a week ago.)

Building rpm packages in /home//rpms/ :
http://www.linuxquestions.org/questi...1-a-766486/#13
rpmbuild -bb mpich-el5.spec :
You can stop the terminal, when the patching has been done,
and continue with a manual './configure' etc. in /rpms/BUILD/mpich-1.2.7p1
....

10-08-11, 07:04 PM	#4
knudfl LQ 5k Club Registered: Jan 2008 Location: Copenhagen, DK Distribution: pclos2010.12, Slack13.1 DebSqueeze, +40+ others, for test only. Posts: 8,081 Rep:	OK, may not work without the dependencies. You can of course check with 'rpm -qa \| grep ' to know, if they are already installed. RPM packages are usually created in /home//rpms/* : See post #13 here http://www.linuxquestions.org/questi...1-a-766486/#13 This package, mpich-1.2.7p1-EL5.x86_64.tar.bz2 is the content of mpich-1.2.7p1-1.el5.x86_64.rpm + mpich-devel-1.2.7p1-1.el5.x86_64.rpm. 'tar xvf mpich-1.2.7p1-EL5.x86_64.tar.bz2' : And you have all the files. >> https://docs.google.com/uc?id=0B7S25...nload&hl=en_US . Last edited by knudfl; 10-08-11 at 07:06 PM.
	Did you find this post helpful? Yes \| No

10-08-11, 03:04 PM	#3
aksharb LQ Newbie Registered: Mar 2011 Posts: 14 Original Poster Rep:	thanks for help. Unfortunately i am just user. so cant use yum . i have to install it in my home dir only. what is the solution?

10-16-11, 07:23 PM	#5
aksharb LQ Newbie Registered: Mar 2011 Posts: 14 Original Poster Rep:	thanks for the help. Please let me know how i can use mpich-1.2.7p1-EL5.x86_64.tar.bz2 directly in use? I am normal user and dont have any rights to install/upgarde any rpms. can you brief on the procedure right from scratch to install the patched/(patches) source.