Media Server Studio doesn't have support for SKL, generation 6 currently. We are working on supporting SKL soon, but there is no date to commit right now. However, if you are using windows you can use Media SDK client, which is a part of INDE suite to run and use Media SDK on Skylake machine.
Download link & details of INDE - https://software.intel.com/en-us/intel-inde
Let us know if you have any follow up questions.