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CPati2
New Contributor III
161 Views

Intel Caffe Compilation Error HDF5

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Hi All,

I am building Intel Caffe on my system, but I am getting following Could NOT find HDF5 error. I spent many hours figuring out work around this, but still no success. I didn't encounter such issue when I build Caffe for first time. Any suggestion will be helpful.

cmake -DCPU_ONLY=on -DBLAS=mkl -DUSE_MKL2017_AS_DEFAULT_ENGINE=o ..

-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Boost version: 1.53.0
-- Found the following Boost libraries:
--   system
--   thread
--   filesystem
--   regex
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp
-- Found GFlags: /usr/local/include
-- Found gflags  (include: /usr/local/include, library: /usr/local/lib/libgflags.a)
-- Found Glog: /usr/local/include
-- Found glog    (include: /usr/local/include, library: /usr/local/lib/libglog.so)
-- Found PROTOBUF: /usr/lib64/libprotobuf.so
-- Found PROTOBUF Compiler: /usr/bin/protoc
CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:108 (message):
  Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS)
Call Stack (most recent call first):
  /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:315 (_FPHSA_FAILURE_MESSAGE)
  /usr/share/cmake/Modules/FindHDF5.cmake:347 (find_package_handle_standard_args)
  cmake/Dependencies.cmake:42 (find_package)
  CMakeLists.txt:50 (include)

Thanks.

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Accepted Solutions
CPati2
New Contributor III
161 Views

Hi All,

I solved this issue. Since, I had to re-install CentOS, a specific package repo was required:

sudo yum install –y epel-release
sudo yum-config-manager --enable epel
sudo yum install hdf5-devel

Thanks.

View solution in original post

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1 Reply
CPati2
New Contributor III
162 Views

Hi All,

I solved this issue. Since, I had to re-install CentOS, a specific package repo was required:

sudo yum install –y epel-release
sudo yum-config-manager --enable epel
sudo yum install hdf5-devel

Thanks.

View solution in original post

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