mkl modulefiles loading error in OneApi toolkit

[yannj]

I installed the current compilers/mkl lib on a centos.

The version of the compiler is : compiler/2021.1.2

The version of the mkl version is : mkl/2021.1.1

When i'm trying to load the mkl, i've got the error :

lio5-devel% module load mkl/latest
Loading mkl version 2021.1.1
ERROR: Unable to locate a modulefile for 'compiler-rt/2021.1.1'

So i installed compiler-rt/2021.1.1 with the package :

intel-oneapi-compiler-dpcpp-cpp-runtime-2021.1.1

Therefore, i can now load the mkl, but then i cannot load the lastest compiler !

lio5-devel% module load compiler/2021.1.2
Loading compiler version 2021.1.2
WARNING: tbb/latest cannot be loaded due to a conflict.
HINT: Might try "module unload tbb" first.

The problem is that the compiler-rt version is older than the lastest compiler, but is needed for the mkl modulefiles.

What is the good way to load the intel mkl with the lastest compiler ?

Thanks in advance,

Yann

[RahulV_intel]

Hi Yann,

The latest version of the DPC++ compiler runtime 2021.1.2 seems to be available via APT. I have installed it on ubuntu 18.04. However, I do not have the CentOS environment to try out.

Could you please try out the steps below:

• Firstly, setup the oneAPI repository, as given in the link below:

https://software.intel.com/content/www/us/en/develop/articles/installing-intel-oneapi-toolkits-via-yum.html#inpage-nav-1

• If you have already set the repository, make sure that you update all the packages.

• To list all the oneAPI packages, use this command:

# YUM:

sudo -E yum --disablerepo="*" --enablerepo="oneAPI" list available



# DNF:

sudo -E dnf --disablerepo="*" --enablerepo="oneAPI" list available

Search for "intel-oneapi-compiler-dpcpp-cpp-runtime-2021.1.2" and if you find it, you may either install/upgrade this package.

Let me know in case you don't see the latest version.

Thanks,

Rahul

[yannj]

Hi Rahul,

Thanks for taking the time to help me.

I think it's great that oneAPI includes scripts for modules. It's so useful. But it looks like it's broken for the mkl lib. 

I've got all the rpm already updated

# yum --disablerepo="*" --enablerepo="oneAPI" update
Modules complémentaires chargés : copr, fastestmirror, langpacks, nvidia
Loading mirror speeds from cached hostfile
No packages marked for update

Here are the available modules :

--------------------------------------------------- /opt/intel/oneapi/modulefiles ----------------------------------------------------
advisor/2021.1.1        compiler-rt32/latest  dev-utilities/2021.1.1  dpct/latest                   itac/2021.1.1     tbb/latest
advisor/latest          compiler/2021.1.1     dev-utilities/latest    dpl/2021.1.2                  itac/latest       vpl/2021.1.1
ccl/2021.1.1            compiler/2021.1.2     dnnl-cpu-gomp/2021.1.1  dpl/latest                    mkl/2021.1.1      vpl/latest
ccl/latest              compiler/latest       dnnl-cpu-gomp/latest    init_opencl/2021.1.2          mkl/latest        vtune/2021.1.2
clck/2021.1.1           compiler32/2021.1.1   dnnl-cpu-iomp/2021.1.1  init_opencl/latest            mkl32/2021.1.1    vtune/latest
clck/latest             compiler32/2021.1.2   dnnl-cpu-iomp/latest    inspector/2021.1.1            mkl32/latest
compiler-rt/2021.1.1    compiler32/latest     dnnl-cpu-tbb/2021.1.1   inspector/latest              mpi/2021.1.1
compiler-rt/2021.1.2    dal/2021.1.1          dnnl-cpu-tbb/latest     intel_ipp_intel64/2021.1.1    mpi/latest
compiler-rt/latest      dal/latest            dnnl/2021.1.1           intel_ipp_intel64/latest      oclfpga/2021.1.2
compiler-rt32/2021.1.1  debugger/10.0.0       dnnl/latest             intel_ippcp_intel64/2021.1.1  oclfpga/latest
compiler-rt32/2021.1.2  debugger/latest       dpct/2021.1.1           intel_ippcp_intel64/latest    tbb/2021.1.1

When i'm trying to load the latest compiler (2021.1.2) with the latest mkl (2021.1.1) i've got the error :

jobic@lio5:~$ module load compiler/latest mkl/latest
Loading compiler version 2021.1.2
Loading tbb version 2021.1.1
Loading debugger version 10.0.0
Loading compiler-rt version 2021.1.2
Loading dpl version 2021.1.2
Loading oclfpga version 2021.1.2
Loading mkl version 2021.1.1
WARNING: compiler-rt/2021.1.1 cannot be loaded due to a conflict.
HINT: Might try "module unload compiler-rt" first.

That's because in the module script, it's trying to load compiler-rt/2021.1.1 by default, which conflicts with my latest rt version.

I can still use everything by loading directly the bash environment scripts :

source /opt/intel/oneapi/compiler/2021.1.2/env/vars.sh
source /opt/intel/oneapi/mkl/2021.1.1/env/vars.sh

But i wanted it to work with modules.

Do you see where the problem is ?

Thanks,

Yann

[yannj]

Hi again,

I tried to desintall/reinstall everything

# yum --disablerepo="*" --enablerepo="oneAPI" remove '*oneapi*'
# yum --disablerepo="*" --enablerepo="oneAPI" install intel-basekit intel-hpckit

I then run the script 

# ./modulefiles-setup.sh

I loaded everything to check :

# . setvars.sh
:: initializing oneAPI environment ...
   BASH version = 4.2.46(2)-release
:: debugger -- latest
:: vpl -- latest
:: mpi -- latest
:: mkl -- latest
:: itac -- latest
:: intelpython -- latest
:: dpcpp-ct -- latest
:: clck -- latest
:: dev-utilities -- latest
:: tbb -- latest
:: advisor -- latest
:: dpl -- latest
:: vtune -- latest
:: dal -- latest
:: ippcp -- latest
:: compiler -- latest
:: ccl -- latest
:: inspector -- latest
:: dnnl -- latest
:: ipp -- latest
:: oneAPI environment initialized ::

# icc -V
Intel(R) C Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.1.2 Build 20201208_000000
Copyright (C) 1985-2020 Intel Corporation.  All rights reserved.

I then have the following modules :

--------------------------------------------------- /opt/intel/oneapi/modulefiles ----------------------------------------------------
advisor/2021.1.1        compiler/latest         dnnl-cpu-iomp/2021.1.1  init_opencl/latest            mkl32/2021.1.1    vtune/latest
advisor/latest          compiler32/2021.1.2     dnnl-cpu-iomp/latest    inspector/2021.1.1            mkl32/latest
ccl/2021.1.1            compiler32/latest       dnnl-cpu-tbb/2021.1.1   inspector/latest              mpi/2021.1.1
ccl/latest              dal/2021.1.1            dnnl-cpu-tbb/latest     intel_ipp_intel64/2021.1.1    mpi/latest
clck/2021.1.1           dal/latest              dnnl/2021.1.1           intel_ipp_intel64/latest      oclfpga/2021.1.2
clck/latest             debugger/10.0.0         dnnl/latest             intel_ippcp_intel64/2021.1.1  oclfpga/latest
compiler-rt/2021.1.2    debugger/latest         dpct/2021.1.1           intel_ippcp_intel64/latest    tbb/2021.1.1
compiler-rt/latest      dev-utilities/2021.1.1  dpct/latest             itac/2021.1.1                 tbb/latest
compiler-rt32/2021.1.2  dev-utilities/latest    dpl/2021.1.2            itac/latest                   vpl/2021.1.1
compiler-rt32/latest    dnnl-cpu-gomp/2021.1.1  dpl/latest              mkl/2021.1.1                  vpl/latest
compiler/2021.1.2       dnnl-cpu-gomp/latest    init_opencl/2021.1.2    mkl/latest                    vtune/2021.1.2

I'm still having the same issue :

$ module load compiler/latest mkl/latest
Loading compiler version 2021.1.2
Loading tbb version 2021.1.1
Loading debugger version 10.0.0
Loading compiler-rt version 2021.1.2
Loading dpl version 2021.1.2
Loading oclfpga version 2021.1.2
Loading mkl version 2021.1.1
ERROR: Unable to locate a modulefile for 'compiler-rt/2021.1.1'

I should load the latest compiler-rt version, not the old one.

In the module script of oneapi/modulefiles/mkl/latest i've got :

# Load dependencies
module load compiler-rt/${modulefilever}
module load tbb/${modulefilever}

and i don't have compiler-rt/${modulefilever}, because the version of compiler/latest is 2012.1.2, therefore i have (see above) compiler-rt/2021.1.2, and not compiler-rt/2021.1.1, which is the version of the mkl.

Thanks again,

Yann

[RahulV_intel]

Hi,

Thanks for reporting your issue. We are working on it and will get back to you.

Thanks,

Rahul

[Khang_N_Intel]

Hi Yann,

I will take a look at this issue and will let you know what to do next.

Also, I went forum thread and it seems like it is closed.

Khang

[Khang_N_Intel]

Hi Yann,

Are you still having problem with loading the modules?

Have you tried the latest version of oneAPI, 2021.2?

Are you using the latest version of CentOS (8.x)?

[MRajesh_intel]

Hi,

Can you please update us on whether your issue has been resolved or not?

Regards

Rajesh.

[yannj]

Hi,

Thanks for the heads up.

I reinstalled everything followed the documentation, and load modulefiles with :

# ./modulefiles-setup.sh
# module use modulefiles

When i'm trying to load, i've got the error :

# module load compiler mkl
Loading compiler version 2021.2.0
Loading tbb version 2021.2.0
Loading debugger version 10.1.1
cmdInfo.c(207):ERROR:11: Usage is 'module-infomode [load|remove|display|help|whatis|switch1|switch2|switch3|switch|nonpersist]'
debugger/latest(54):ERROR:102: Tcl command execution failed: if { [ module-info mode unload ] } {
puts stderr "Removing $modulefilename version $modulefilever"
}

Loading compiler-rt version 2021.2.0
compiler/latest(105):ERROR:102: Tcl command execution failed: if { [ is-avail dpl ] } {
module load dpl
}

Loading mkl version 2021.2.0
compiler-rt/2021.2.0(71):ERROR:150: Module 'compiler-rt/2021.2.0' conflicts with the currently loaded module(s) 'compiler-rt/latest'
compiler-rt/2021.2.0(71):ERROR:102: Tcl command execution failed: conflict $mname64

tbb/2021.2.0(73):ERROR:150: Module 'tbb/2021.2.0' conflicts with the currently loaded module(s) 'tbb/latest'
tbb/2021.2.0(73):ERROR:102: Tcl command execution failed: conflict $mname64

Regards,

Yann

[MRajesh_intel]

Hi,

Can you please specify the OS version used.

Thanks

Rajesh.

[MRajesh_intel]

Hi,

Can you please provide the above details?

Regards

Rajesh.

[yannj]

Hi,

Sorry for the late answer.

I'm on

cat /etc/redhat-release
CentOS Linux release 7.6.1810 (Core)

Regards,

Yann

[MRajesh_intel]

Hi,

We currently do not support CentOS 7.x

Please visit the below link for the system requirements.

https://software.intel.com/content/www/us/en/develop/articles/oneapi-math-kernel-library-system-requirements.html

Regards

Rajesh.

[MRajesh_intel]

Hi,

We are closing this thread for now as we don't support older CentOS. If you require any additional assistance from Intel, please start a new thread. Any further interaction in this thread will be considered community only.

Have a Good day.

Regards

Rajesh

[RobbieTheK]

I fixed ours by updating the module file for intel-oneAPI-toolkit/mkl/2023.1.0 and just put the correct module names that correspond to compiler-rt and tbb:

# Load required dependencies

if { ![ is-loaded tbb ] }           { module load intel-tbb-oss/intel64/2020.3 }

if { ![ is-loaded compiler-rt ] }   { module load intel-oneAPI-toolkit/compiler-rt/2023.1.0 }