I have used the Compare feature from GUI by selecting two amplxe files from different runs. How can I do this on the command-line, reporting out e.g. the Summary pane of a comparison?
I'm sorry, but right now it looks liks you would have to do this manually. For example, output the summary report for each result in CSV format and then use a script to process the output of each report to do the comparison.
[bash]$ amplxe-cl -report summary -format=csv -csv-delimiter=comma -r r001hs > r1results.csv
$ amplxe-cl -report summary -format=csv -csv-delimiter=comma -r r002hs > r2results.csv
$ awk -f compare.awk F1=r1results.csv F2=r2results.csv > comparison.txt
Something like that. Or, whatever your favorite scripting language is. ;)
Alternately, you can import the results in the GUI and use the Compare functionality there.