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Beginner
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HDF5 1.10.2 error

I am unsure if asking on intel support forum is the best option; however, let's see.

Using the following commands:

CC=mpicc CFLAGS='-O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel' CXX=mpicxx CXXFLAGS='-O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel' CPP='icc -E' CXXCPP='icpc -E' F9X=mpif90 FC=mpif90 FCFLAGS='-O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel' LDFLAGS="-L/Users/jessequinn/Packages/zlib-1.2.11/lib -Wl,-commons,use_dylibs,-rpath,/Users/jessequinn/Packages/zlib-1.2.11/lib" ../configure --prefix=/Users/jessequinn/Packages/hdf5-1.10.2 --enable-shared --enable-static --enable-fortran --enable-parallel --with-zlib=/Users/jessequinn/Packages/zlib-1.2.11 && make -j 4 all && make -j 4 install

I receive the following error:

mpif90  -I. -I../../../fortran/test -I../../src -I../../fortran/src     -I../../fortran/src -I../../fortran/src -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -c -o tH5E.o ../../../fortran/test/tH5E.F90

mpif90  -I. -I../../../fortran/test -I../../src -I../../fortran/src     -I../../fortran/src -I../../fortran/src -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -c -o tHDF5.o ../../../fortran/test/tHDF5.F90

mpif90  -I. -I../../../fortran/test -I../../src -I../../fortran/src     -I../../fortran/src -I../../fortran/src -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -c -o fortranlib_test.o ../../../fortran/test/fortranlib_test.F90

  FCLD     fortranlib_test

ifort: error #10236: File not found:  '../../fortran/src/.libs/libhdf5_fortran.dylib'

make[2]: *** [fortranlib_test] Error 1

make[1]: *** [all-recursive] Error 1

make: *** [all-recursive] Error 1

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Valued Contributor I
8 Views

Ok, given from your other

Ok, given from your other post, same thing: SIP on macOS?

 

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Beginner
8 Views

not SIP.

not SIP.

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Beginner
8 Views

and the file does exist

and the file does exist

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Valued Contributor I
8 Views

Can you post the exact

Can you post the exact command that your makefile tries to execute for linking? You get this with make V=1 usually. 

What about case-sensitiveness vs. insensitiveness? I see hdf5 in the library name and HDF5 in the source file names. 

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mpif90  -I. -I../../..

mpif90  -I. -I../../../fortran/test -I../../src -I../../fortran/src     -I../../fortran/src -I../../fortran/src -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -c -o fortranlib_test.o ../../../fortran/test/fortranlib_test.F90

/bin/sh ../../libtool  --tag=FC   --mode=link mpif90 -I../../fortran/src -I../../fortran/src -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -L/Users/jessequinn/Packages/zlib-1.2.11/lib  -Wl,-commons,use_dylibs  -L/Users/jessequinn/Packages/zlib-1.2.11/lib -Wl,-commons,use_dylibs,-rpath,/Users/jessequinn/Packages/zlib-1.2.11/lib -o fortranlib_test tH5F.o tH5D.o tH5R.o tH5S.o tH5T.o tH5VL.o tH5Z.o tH5Sselect.o tH5P.o tH5A.o tH5I.o tH5G.o tH5E.o tHDF5.o fortranlib_test.o libh5test_fortran.la ../../test/libh5test.la ../../fortran/src/libhdf5_fortran.la ../../src/libhdf5.la -lz -ldl -lm 

libtool: link: mpif90 -I../../fortran/src -I../../fortran/src -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -Wl,-commons -Wl,use_dylibs -Wl,-commons -Wl,use_dylibs -Wl,-rpath -Wl,/Users/jessequinn/Packages/zlib-1.2.11/lib -o .libs/fortranlib_test tH5F.o tH5D.o tH5R.o tH5S.o tH5T.o tH5VL.o tH5Z.o tH5Sselect.o tH5P.o tH5A.o tH5I.o tH5G.o tH5E.o tHDF5.o fortranlib_test.o  -L/Users/jessequinn/Packages/zlib-1.2.11/lib ./.libs/libh5test_fortran.a ../../test/.libs/libh5test.a ../../fortran/src/.libs/libhdf5_fortran.dylib /Users/jessequinn/Packages/tmp/hdf5-1.10.2/build/src/.libs/libhdf5.dylib ../../src/.libs/libhdf5.dylib -lz -ldl -lm

ifort: error #10236: File not found:  '../../fortran/src/.libs/libhdf5_fortran.dylib'

make[2]: *** [fortranlib_test] Error 1

make[1]: *** [all-recursive] Error 1

make: *** [all-recursive] Error 1

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Valued Contributor I
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Interesting. Looks fine at

Interesting. Looks fine at first glance. libtool uses mpif90 as linker, and includes library libtool files for libhdf5.dylib and libhdf5_fortran.dylib. For the former, both a relativ path and an absolute path is included, for the latter only a relative path. Not sure why this is the case, but maybe inspection of the .la files might help. Also inspection of the library with file and otool -L might help to show any inconsistencies in the file (different compilers, different file type etc.).

 

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Beginner
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Actually I was wrong. The

Actually I was wrong. The file does not exist.

-rw-r--r--  1 jessequinn  staff    9522  4 Apr 17:44 H5Af.o

-rw-r--r--  1 jessequinn  staff   11879  4 Apr 17:45 H5Aff.o

-rw-r--r--  1 jessequinn  staff   13071  4 Apr 17:44 H5Df.o

-rw-r--r--  1 jessequinn  staff   16503  4 Apr 17:45 H5Dff.o

-rw-r--r--  1 jessequinn  staff    2986  4 Apr 17:44 H5Ef.o

-rw-r--r--  1 jessequinn  staff    2530  4 Apr 17:45 H5Eff.o

-rw-r--r--  1 jessequinn  staff    6386  4 Apr 17:44 H5Ff.o

-rw-r--r--  1 jessequinn  staff    5515  4 Apr 17:45 H5Fff.o

-rw-r--r--  1 jessequinn  staff    9342  4 Apr 17:44 H5Gf.o

-rw-r--r--  1 jessequinn  staff    6156  4 Apr 17:45 H5Gff.o

-rw-r--r--  1 jessequinn  staff    2758  4 Apr 17:44 H5If.o

-rw-r--r--  1 jessequinn  staff    2407  4 Apr 17:45 H5Iff.o

-rw-r--r--  1 jessequinn  staff    7470  4 Apr 17:44 H5Lf.o

-rw-r--r--  1 jessequinn  staff    5880  4 Apr 17:45 H5Lff.o

-rw-r--r--  1 jessequinn  staff   10558  4 Apr 17:44 H5Of.o

-rw-r--r--  1 jessequinn  staff    7000  4 Apr 17:45 H5Off.o

-rw-r--r--  1 jessequinn  staff   47513  4 Apr 17:44 H5Pf.o

-rw-r--r--  1 jessequinn  staff   53663  4 Apr 17:45 H5Pff.o

-rw-r--r--  1 jessequinn  staff    3676  4 Apr 17:44 H5Rf.o

-rw-r--r--  1 jessequinn  staff    5897  4 Apr 17:45 H5Rff.o

-rw-r--r--  1 jessequinn  staff   12683  4 Apr 17:44 H5Sf.o

-rw-r--r--  1 jessequinn  staff   18437  4 Apr 17:45 H5Sff.o

-rw-r--r--  1 jessequinn  staff   19181  4 Apr 17:44 H5Tf.o

-rw-r--r--  1 jessequinn  staff   16732  4 Apr 17:45 H5Tff.o

-rw-r--r--  1 jessequinn  staff    1303  4 Apr 17:44 H5Zf.o

-rw-r--r--  1 jessequinn  staff    1534  4 Apr 17:45 H5Zff.o

-rw-r--r--  1 jessequinn  staff   12763  4 Apr 17:44 H5_f.o

-rw-r--r--  1 jessequinn  staff   26217  4 Apr 17:45 H5_ff.o

-rw-r--r--  1 jessequinn  staff  128896  4 Apr 17:45 H5_gen.o

-rw-r--r--  1 jessequinn  staff   18590  4 Apr 17:45 H5f90global.o

-rw-r--r--  1 jessequinn  staff    1581  4 Apr 17:44 H5f90kit.o

-rw-r--r--  1 jessequinn  staff    1183  4 Apr 17:44 H5fortkit.o

-rw-r--r--  1 jessequinn  staff     895  4 Apr 17:44 H5fortran_types.o

-rw-r--r--  1 jessequinn  staff     705  4 Apr 17:45 HDF5.o

-rw-r--r--  1 jessequinn  staff  527168  4 Apr 17:45 libhdf5_fortran.a

lrwxr-xr-x  1 jessequinn  staff      25  4 Apr 17:45 libhdf5_fortran.dylib -> libhdf5_fortran.100.dylib

lrwxr-xr-x  1 jessequinn  staff      21  4 Apr 17:45 libhdf5_fortran.la -> ../libhdf5_fortran.la

-rw-r--r--  1 jessequinn  staff    1103  4 Apr 17:45 libhdf5_fortran.lai

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Valued Contributor I
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So, the file libhdf5_fortran

So, the file libhdf5_fortran.100.dylib is missing, where the link is pointing to? You best go back to the step where that library should have been built and see what goes wrong there. 

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Beginner
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Yes, links points to non

Yes, the link points to a non-existent file. I cannot find any reference to the library being built. I checked the config.log and the Makefile.

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Beginner
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I found the following

I found the following reference,

# libhdf5_fortran.la - a libtool library file

# Generated by libtool (GNU libtool) 2.4.6

#

# Please DO NOT delete this file!

# It is necessary for linking the library.

 

# The name that we can dlopen(3).

dlname='libhdf5_fortran.100.dylib'

 

# Names of this library.

library_names='libhdf5_fortran.100.dylib libhdf5_fortran.dylib'

 

# The name of the static archive.

old_library='libhdf5_fortran.a'

 

# Linker flags that cannot go in dependency_libs.

inherited_linker_flags=' '

 

# Libraries that this one depends upon.

dependency_libs=' -L/Users/jessequinn/Packages/zlib-1.2.11/lib /Users/jessequinn/Packages/tmp/hdf5-1.10.2/build/src/libhdf5.la -lz -ldl -lm'

 

# Names of additional weak libraries provided by this library

weak_library_names=''

 

# Version information for libhdf5_fortran.

current=101

age=1

revision=1

 

# Is this an already installed library?

installed=no

 

# Should we warn about portability when linking against -modules?

shouldnotlink=no

 

# Files to dlopen/dlpreopen

dlopen=''

dlpreopen=''

 

# Directory that this library needs to be installed in:

libdir='/Users/jessequinn/Packages/hdf5-1.10.2/lib'

relink_command=""

 

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Beginner
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Using --disable-shared

Using --disable-shared (disabling build shared libraries)

CC=mpicc CFLAGS='-O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel' CXX=mpicxx CXXFLAGS='-O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel' CPP='icc -E' CXXCPP='icpc -E' F9X=mpif90 FC=mpif90 FCFLAGS='-O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -assume nostd_value' LDFLAGS="-L/Users/jessequinn/Packages/zlib-1.2.11/lib -Wl,-commons,use_dylibs,-rpath,/Users/jessequinn/Packages/zlib-1.2.11/lib" ../configure --prefix=/Users/jessequinn/Packages/hdf5-1.10.2 --disable-shared --enable-static --enable-fortran --enable-fortran2003 --enable-parallel --with-zlib=/Users/jessequinn/Packages/zlib-1.2.11 && make -j 4 all && make -j 4 install

Allowed for proper install. Any idea why?

 

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Valued Contributor I
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--disable-shared worked

--disable-shared worked because then it does only static linking and the problem with the missing shared library does not occur. The file you posted before is the libtool .la library file, which serves as the target for the library when libtool is used together with makefiles and autotools. Looking into my build histories it looks like as the .la file is produced only after the dynamic library (.so under Unix, .dylib under macOS, .dll under Windows) has been built. Also the link libxxx.dylib -> libxxx.100.dylib comes later usually. So something happened probably to your dylib. Did you check when this library is actually linked? Could you check the non-parallel (serial) built to see whether it works there? 

 

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Beginner
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I couldn't find anything in

I couldn't find anything in the hdf5 files that refereed to the .100.dylib file. I can try a non-parallel build to see if it happens again.

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Valued Contributor I
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Actually,  on two different

Actually,  on two different MacBooks I cannot build the hdf5 library. On the newer one, the compilation of the main library fails, on the older

one, it doesn't allow me to build dynamic fortran libraries. What happens if you do a `make V=1` within the fortran/src directory?

 

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Beginner
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/Users/jessequinn/Packages

.deps/H5Lf.Tpo -c ../../../fortran/src/H5Lf.c -o H5Lf.o >/dev/null 2>&1

depbase=`echo H5Of.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\

    /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src  -I/Users/jessequinn/Packages/zlib-1.2.11/include   -DNDEBUG -UH5_DEBUG_API -I../../../src  -std=c99 -Wcheck -Wall  -Wl,-s  -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Of.lo -MD -MP -MF $depbase.Tpo -c -o H5Of.lo ../../../fortran/src/H5Of.c &&\

    mv -f $depbase.Tpo $depbase.Plo

depbase=`echo H5Pf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\

    /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src  -I/Users/jessequinn/Packages/zlib-1.2.11/include   -DNDEBUG -UH5_DEBUG_API -I../../../src  -std=c99 -Wcheck -Wall  -Wl,-s  -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Pf.lo -MD -MP -MF $depbase.Tpo -c -o H5Pf.lo ../../../fortran/src/H5Pf.c &&\

    mv -f $depbase.Tpo $depbase.Plo

depbase=`echo H5Rf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\

    /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src  -I/Users/jessequinn/Packages/zlib-1.2.11/include   -DNDEBUG -UH5_DEBUG_API -I../../../src  -std=c99 -Wcheck -Wall  -Wl,-s  -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Rf.lo -MD -MP -MF $depbase.Tpo -c -o H5Rf.lo ../../../fortran/src/H5Rf.c &&\

    mv -f $depbase.Tpo $depbase.Plo

depbase=`echo H5Sf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\

    /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src  -I/Users/jessequinn/Packages/zlib-1.2.11/include   -DNDEBUG -UH5_DEBUG_API -I../../../src  -std=c99 -Wcheck -Wall  -Wl,-s  -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Sf.lo -MD -MP -MF $depbase.Tpo -c -o H5Sf.lo ../../../fortran/src/H5Sf.c &&\

    mv -f $depbase.Tpo $depbase.Plo

libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src -I/Users/jessequinn/Packages/zlib-1.2.11/include -DNDEBUG -UH5_DEBUG_API -I../../../src -std=c99 -Wcheck -Wall -Wl,-s -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Of.lo -MD -MP -MF .deps/H5Of.Tpo -c ../../../fortran/src/H5Of.c  -fno-common -DPIC -o .libs/H5Of.o

libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src -I/Users/jessequinn/Packages/zlib-1.2.11/include -DNDEBUG -UH5_DEBUG_API -I../../../src -std=c99 -Wcheck -Wall -Wl,-s -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Pf.lo -MD -MP -MF .deps/H5Pf.Tpo -c ../../../fortran/src/H5Pf.c  -fno-common -DPIC -o .libs/H5Pf.o

libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src -I/Users/jessequinn/Packages/zlib-1.2.11/include -DNDEBUG -UH5_DEBUG_API -I../../../src -std=c99 -Wcheck -Wall -Wl,-s -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Rf.lo -MD -MP -MF .deps/H5Rf.Tpo -c ../../../fortran/src/H5Rf.c  -fno-common -DPIC -o .libs/H5Rf.o

libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src -I/Users/jessequinn/Packages/zlib-1.2.11/include -DNDEBUG -UH5_DEBUG_API -I../../../src -std=c99 -Wcheck -Wall -Wl,-s -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Sf.lo -MD -MP -MF .deps/H5Sf.Tpo -c ../../../fortran/src/H5Sf.c  -fno-common -DPIC -o .libs/H5Sf.o

libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src -I/Users/jessequinn/Packages/zlib-1.2.11/include -DNDEBUG -UH5_DEBUG_API -I../../../src -std=c99 -Wcheck -Wall -Wl,-s -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Of.lo -MD -MP -MF .deps/H5Of.Tpo -c ../../../fortran/src/H5Of.c -o H5Of.o >/dev/null 2>&1

libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src -I/Users/jessequinn/Packages/zlib-1.2.11/include -DNDEBUG -UH5_DEBUG_API -I../../../src -std=c99 -Wcheck -Wall -Wl,-s -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Rf.lo -MD -MP -MF .deps/H5Rf.Tpo -c ../../../fortran/src/H5Rf.c -o H5Rf.o >/dev/null 2>&1

libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src -I/Users/jessequinn/Packages/zlib-1.2.11/include -DNDEBUG -UH5_DEBUG_API -I../../../src -std=c99 -Wcheck -Wall -Wl,-s -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Sf.lo -MD -MP -MF .deps/H5Sf.Tpo -c ../../../fortran/src/H5Sf.c -o H5Sf.o >/dev/null 2>&1

libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src -I/Users/jessequinn/Packages/zlib-1.2.11/include -DNDEBUG -UH5_DEBUG_API -I../../../src -std=c99 -Wcheck -Wall -Wl,-s -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Pf.lo -MD -MP -MF .deps/H5Pf.Tpo -c ../../../fortran/src/H5Pf.c -o H5Pf.o >/dev/null 2>&1

depbase=`echo H5Tf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\

    /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src  -I/Users/jessequinn/Packages/zlib-1.2.11/include   -DNDEBUG -UH5_DEBUG_API -I../../../src  -std=c99 -Wcheck -Wall  -Wl,-s  -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Tf.lo -MD -MP -MF $depbase.Tpo -c -o H5Tf.lo ../../../fortran/src/H5Tf.c &&\

    mv -f $depbase.Tpo $depbase.Plo

depbase=`echo H5Zf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\

    /bin/sh ../../libtool  --tag=CC   --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src  -I/Users/jessequinn/Packages/zlib-1.2.11/include   -DNDEBUG -UH5_DEBUG_API -I../../../src  -std=c99 -Wcheck -Wall  -Wl,-s  -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Zf.lo -MD -MP -MF $depbase.Tpo -c -o H5Zf.lo ../../../fortran/src/H5Zf.c &&\

    mv -f $depbase.Tpo $depbase.Plo

make[1]: *** No rule to make target `../../src/libhdf5.la', needed by `libhdf5_fortran.la'.  Stop.

make[1]: *** Waiting for unfinished jobs....

libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src -I/Users/jessequinn/Packages/zlib-1.2.11/include -DNDEBUG -UH5_DEBUG_API -I../../../src -std=c99 -Wcheck -Wall -Wl,-s -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Tf.lo -MD -MP -MF .deps/H5Tf.Tpo -c ../../../fortran/src/H5Tf.c  -fno-common -DPIC -o .libs/H5Tf.o

libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src -I/Users/jessequinn/Packages/zlib-1.2.11/include -DNDEBUG -UH5_DEBUG_API -I../../../src -std=c99 -Wcheck -Wall -Wl,-s -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Zf.lo -MD -MP -MF .deps/H5Zf.Tpo -c ../../../fortran/src/H5Zf.c  -fno-common -DPIC -o .libs/H5Zf.o

libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src -I/Users/jessequinn/Packages/zlib-1.2.11/include -DNDEBUG -UH5_DEBUG_API -I../../../src -std=c99 -Wcheck -Wall -Wl,-s -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Zf.lo -MD -MP -MF .deps/H5Zf.Tpo -c ../../../fortran/src/H5Zf.c -o H5Zf.o >/dev/null 2>&1

libtool: compile:  mpicc -DHAVE_CONFIG_H -I. -I../../../fortran/src -I../../src -I/Users/jessequinn/Packages/zlib-1.2.11/include -DNDEBUG -UH5_DEBUG_API -I../../../src -std=c99 -Wcheck -Wall -Wl,-s -O3 -O3 -xcore-avx2 -ip -mp1 -m64 -shared-intel -MT H5Tf.lo -MD -MP -MF .deps/H5Tf.Tpo -c ../../../fortran/src/H5Tf.c -o H5Tf.o >/dev/null 2>&1

make: *** [all] Error 2

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make[1]: *** No rule to make

make[1]: *** No rule to make target `../../src/libhdf5.la', needed by `libhdf5_fortran.la'.  Stop.


libhdf5.la is missing.
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Valued Contributor I
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Yep, it seems that the base

Yep, it seems that the base library (libhdf5) doesn't build so easily with a non-native C compiler (i.e. non-clang) on macOS. I now managed to build the whole thing (libhdf5.dylib and libhdf5_fortran.dylib) with clang as C compiler and gfortran (8.0.1) as fortran compiler. So you have to figure out why your libhdf5 didn't build and maybe complain to the developers. In any case, it is a C problem, nothing to do with fortran. I think, this closes this thread. 

 

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I can talk to the HDF group..

I can talk to the HDF group...

Thanks,

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