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Using the latest 2018 intel compilers and mkl with openmpi or mpich on OSX i get numerous mkl reference errors during linking of siesta. I have included the arch.make and a log file that contains the FFLAGS = -O0 -g -check bounds -traceback. Any information would be appreciated.
The following used openmpi-3.0.1; however, the exact same issue happens with mpich-3.1.4
siesta version 4.1-b3
Any guidance would be appreciated.
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resolved.
The following resolved the linking errors
LIBS = -qopenmp $(MKL)/lib/libmkl_blas95_ilp64.a $(MKL)/lib/libmkl_lapack95_ilp64.a $(INTEL_LIBS) -Wl,-rpath,$(MKL)/lib \
-lmkl_scalapack_ilp64 -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -lmkl_blacs_mpich_ilp64 -liomp5 -lpthread -lm -ldl \
$(HDF5_LIBS) -Wl,-rpath,$(HDF5_ROOT)/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 \
$(NETCDF_LIBS) -Wl,-rpath,$(NETCDF_ROOT)/lib -lnetcdf $(NETCDFF_LIBS) -Wl,-rpath,$(NETCDFF_ROOT)/lib -lnetcdff \
$(OTHER_LIBS) -Wl,-rpath,$(HOME)/Packages/zlib-1.2.11/lib -lz \
$(MPI_LIBS) -Wl,-rpath,$(HOME)/Packages/mpich-3.1.4/lib -lmpi $(COMP_LIBS)
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Hi Jesse,
Nice to know you resolved the problem. Just let you know, here is MKL library link advisor :
https://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/
which will help to provide the exact MKL library wanted when you link in application.
for example, -qopenmp $(MKL)/lib/libmkl_blas95_ilp64.a $(MKL)/lib/libmkl_lapack95_ilp64.a $(INTEL_LIBS) -Wl,-rpath,$(MKL)/lib \
-lmkl_scalapack_ilp64 -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -lmkl_blacs_mpich_ilp64 -liomp5 -lpthread -lm -ldl
Here you are using the ILP64 (integer is 64bit). Please make sure your siesta application ask the 64bit integer.
Best Regards,
Ying

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