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Ion_C_
Beginner
407 Views

gcc mkl dss solver error

Good afternoon!

I am running Ubuntu Linux and I have installed MKL library. I tried to compile the following example:

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/*
*   Content : MKL DSS C example
*
********************************************************************************
*/
/*
**
** Example program to solve symmetric positive definite system of equations.
**
*/
#include<stdio.h>
#include<stdlib.h>
#include<math.h>
#include "mkl_dss.h"
#include "mkl_types.h"
/*
** Define the array and rhs vectors
*/
#define NROWS       5
#define NCOLS       5
#define NNONZEROS   9
#define NRHS        1
static const MKL_INT nRows = NROWS;
static const MKL_INT nCols = NCOLS;
static const MKL_INT nNonZeros = NNONZEROS;
static const MKL_INT nRhs = NRHS;
static _INTEGER_t rowIndex[NROWS + 1] = { 1, 6, 7, 8, 9, 10 };
static _INTEGER_t columns[NNONZEROS] = { 1, 2, 3, 4, 5, 2, 3, 4, 5 };
static _DOUBLE_PRECISION_t values[NNONZEROS] = { 9, 1.5, 6, .75, 3, 0.5, 12, .625, 16 };
static _DOUBLE_PRECISION_t rhs[NCOLS] = { 1, 2, 3, 4, 5 };

MKL_INT main ()
{
  MKL_INT i;
  /* Allocate storage for the solver handle and the right-hand side. */
  _DOUBLE_PRECISION_t solValues[NROWS];
  _MKL_DSS_HANDLE_t handle;
  _INTEGER_t error;
  _CHARACTER_t statIn[] = "determinant";
  _DOUBLE_PRECISION_t statOut[5];
  MKL_INT opt = MKL_DSS_DEFAULTS;
  MKL_INT sym = MKL_DSS_SYMMETRIC;
  MKL_INT type = MKL_DSS_POSITIVE_DEFINITE;
/* --------------------- */
/* Initialize the solver */
/* --------------------- */
  error = dss_create (handle, opt);
  if (error != MKL_DSS_SUCCESS)
    goto printError;
/* ------------------------------------------- */
/* Define the non-zero structure of the matrix */
/* ------------------------------------------- */
  error = dss_define_structure (handle, sym, rowIndex, nRows, nCols, columns, nNonZeros);
  if (error != MKL_DSS_SUCCESS)
    goto printError;
/* ------------------ */
/* Reorder the matrix */
/* ------------------ */
  error = dss_reorder (handle, opt, 0);
  if (error != MKL_DSS_SUCCESS)
    goto printError;
/* ------------------ */
/* Factor the matrix  */
/* ------------------ */
  error = dss_factor_real (handle, type, values);
  if (error != MKL_DSS_SUCCESS)
    goto printError;
/* ------------------------ */
/* Get the solution vector  */
/* ------------------------ */
  error = dss_solve_real (handle, opt, rhs, nRhs, solValues);
  if (error != MKL_DSS_SUCCESS)
    goto printError;
/* ------------------------ */
/* Get the determinant (not for a diagonal matrix) */
/*--------------------------*/
  if (nRows < nNonZeros)
    {
      error = dss_statistics (handle, opt, statIn, statOut);
      if (error != MKL_DSS_SUCCESS)
        goto printError;
/*-------------------------*/
/* print determinant       */
/*-------------------------*/
      printf (" determinant power is %g \n", statOut[0]);
      printf (" determinant base is %g \n", statOut[1]);
      printf (" Determinant is %g \n", (pow (10.0, statOut[0])) * statOut[1]);
    }
/* -------------------------- */
/* Deallocate solver storage  */
/* -------------------------- */
  error = dss_delete (handle, opt);
  if (error != MKL_DSS_SUCCESS)
    goto printError;
/* ---------------------- */
/* Print solution vector  */
/* ---------------------- */
  printf (" Solution array: ");
  for (i = 0; i < nCols; i++)
    printf (" %g", solValues);
  printf ("\n");
  exit (0);
printError:
  printf ("Solver returned error code %d\n", error);
  exit (1);
}

After compilation when I run the program I obtain the following message:

MKL-DSS-DSS-Error, Invalid option
Solver returned error code -13

The same program is compiled and run perfectly in Windows using Visual C++ compiler and MKL library.

The command for the code compilation in Linux is following:

g++ -m64 tstdss3.cpp -o test2 -L/opt/intel/mkl/lib/intel64 -L/opt/intel/parallel_studio_xe_2016.3.067/compilers_and_libraries_2016/linux/compiler/lib/intel64 -I/opt/intel/mkl/include -lmkl_intel_ilp64  -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl -v
Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.1' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.1)
COLLECT_GCC_OPTIONS='-m64' '-o' 'test2' '-L/opt/intel/mkl/lib/intel64' '-L/opt/intel/parallel_studio_xe_2016.3.067/compilers_and_libraries_2016/linux/compiler/lib/intel64' '-I' '/opt/intel/mkl/include' '-v' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 /usr/lib/gcc/x86_64-linux-gnu/5/cc1plus -quiet -v -I /opt/intel/mkl/include -imultiarch x86_64-linux-gnu -D_GNU_SOURCE tstdss3.cpp -quiet -dumpbase tstdss3.cpp -m64 -mtune=generic -march=x86-64 -auxbase tstdss3 -version -fstack-protector-strong -Wformat -Wformat-security -o /tmp/ccB2IPdf.s
GNU C++ (Ubuntu 5.4.0-6ubuntu1~16.04.1) version 5.4.0 20160609 (x86_64-linux-gnu)
        compiled by GNU C version 5.4.0 20160609, GMP version 6.1.0, MPFR version 3.1.4, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/5"
ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/5/../../../../x86_64-linux-gnu/include"
#include "..." search starts here:
#include <...> search starts here:
 /opt/intel/mkl/include
 /usr/include/c++/5
 /usr/include/x86_64-linux-gnu/c++/5
 /usr/include/c++/5/backward
 /usr/lib/gcc/x86_64-linux-gnu/5/include
 /usr/local/include
 /usr/lib/gcc/x86_64-linux-gnu/5/include-fixed
 /usr/include/x86_64-linux-gnu
 /usr/include
End of search list.
GNU C++ (Ubuntu 5.4.0-6ubuntu1~16.04.1) version 5.4.0 20160609 (x86_64-linux-gnu)
        compiled by GNU C version 5.4.0 20160609, GMP version 6.1.0, MPFR version 3.1.4, MPC version 1.0.3
GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
Compiler executable checksum: 54c46ecad36e047174be4f497c131a62
COLLECT_GCC_OPTIONS='-m64' '-o' 'test2' '-L/opt/intel/mkl/lib/intel64' '-L/opt/intel/parallel_studio_xe_2016.3.067/compilers_and_libraries_2016/linux/compiler/lib/intel64' '-I' '/opt/intel/mkl/include' '-v' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 as -v -I /opt/intel/mkl/include --64 -o /tmp/ccd7qc5s.o /tmp/ccB2IPdf.s
GNU assembler version 2.26.1 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.26.1
COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/
LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/5/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/5/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-m64' '-o' 'test2' '-L/opt/intel/mkl/lib/intel64' '-L/opt/intel/parallel_studio_xe_2016.3.067/compilers_and_libraries_2016/linux/compiler/lib/intel64' '-I' '/opt/intel/mkl/include' '-v' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 /usr/lib/gcc/x86_64-linux-gnu/5/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/5/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper -plugin-opt=-fresolution=/tmp/cc8xx8XG.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -z relro -o test2 /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/5/crtbegin.o -L/opt/intel/mkl/lib/intel64 -L/opt/intel/parallel_studio_xe_2016.3.067/compilers_and_libraries_2016/linux/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. /tmp/ccd7qc5s.o -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -ldl -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/5/crtend.o /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/crtn.o

When I run gcc -v I obtain:

gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.1' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.1)

What can I do to run the program?

0 Kudos
2 Replies
mecej4
Black Belt
407 Views

One or more of the MKL libraries that you are using contain ilp64 in their name(s). Any integer type arguments to routines in MKL should be 64-bit integers when those libraries are used. If you want to pass 32-bit integer arguments to MKL functions, you should use MKL libraries with lp64 in their names, instead. The MKL Link Line Advisor  can help you with this.

Ion_C_
Beginner
407 Views

Thanks for support. I used the The MKL Link Line Advisor  and the problem was solved.

I changed  -lmkl_intel_ilp64 to -lmkl_intel_lp64 and worked.

Reply