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virtualdvid
Innovator
2,661 Views

No module named 'keras'

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I'm trying to run qsub myjob but I'am getting an error. Here what I've done so far:

1. conda create -n myenv intel python=3

2. source activate myenv

3. installed libraries

pip install --ignore-installed --upgrade keras

pip install --ignore-installed --upgrade tensorflow

4. created myjob file with this lines inside:

# PBS -l nodes=1

cd $PBS_O_WORKDIR

echo Starting calculation

python NASNet.py

echo End of calculation

5. Executed qsub myjob

6. I'm getting this error:

from keras.preprocessing.image import ImageDataGenerator

ModuleNotFoundError: No module named 'keras'

I did a test using python NASNet.py in the terminal and it worked perfectly. Why is it not recognizing keras when I'am using qsub?

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Accepted Solutions
idata
Community Manager
490 Views

Hi,

 

 

Thank you for the question.

 

Kindly include the command to activate you environment (source activate myenv) as part of the script. i.e please modify the myjobfile as below :

 

 

# PBS -l nodes=1 cd $PBS_O_WORKDIR echo Starting calculation source activate myenv python NASNet.py echo End of calculation  Please let us know if the answer provided helped.  Regards, Anju

 

View solution in original post

3 Replies
idata
Community Manager
491 Views

Hi,

 

 

Thank you for the question.

 

Kindly include the command to activate you environment (source activate myenv) as part of the script. i.e please modify the myjobfile as below :

 

 

# PBS -l nodes=1 cd $PBS_O_WORKDIR echo Starting calculation source activate myenv python NASNet.py echo End of calculation  Please let us know if the answer provided helped.  Regards, Anju

 

View solution in original post

virtualdvid
Innovator
490 Views

Thank you! It worked perfectly!

idata
Community Manager
490 Views

Hi ,

 

 

Thanks for the confirmation. We are closing this thread.

 

Feel free to open another thread for any further queries.

 

 

Regards,

 

Anju