Toolkit setup .....sparsetools/bsr.o.d" failed with exit status 4

idata · ‎08-18-2017

Hello everyone,

I seem to be getting issues running the toolkit setup script (bin/setup.sh) on 16.04 LTS. The error I'm getting is:

x86_64-linux-gnu-g++: internal compiler error: Killed (program cc1plus)
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-5/README.Bugs> for instructions.
error: Command "x86_64-linux-gnu-g++ -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D__STDC_FORMAT_MACROS=1 -Iscipy/sparse/sparsetools -I/usr/local/lib/python3.5/dist-packages/numpy/core/include -I/usr/include/python3.5m -c scipy/sparse/sparsetools/bsr.cxx -o build/temp.linux-x86_64-3.5/scipy/sparse/sparsetools/bsr.o -MMD -MF build/temp.linux-x86_64-3.5/scipy/sparse/sparsetools/bsr.o.d" failed with exit status 4

    ----------------------------------------

Command "/usr/bin/python3 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-t9rx4jfk/scipy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-5ev4wusr-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-t9rx4jfk/scipy/

        Installation failed. Error on line 98

Many thanks

idata · ‎08-18-2017

@elie Hi, are you running toolkit setup script on a virtual machine or on Ubuntu 16.04 LTS natively? Also can you provide some details regarding the physical machine are you using? Thanks.

idata · ‎08-18-2017

Hi @Tome_at_Intel

I was running off a fresh install of Ubuntu 16.04 LTS on a Virtual Box VM. Having read the comments about the lack of support for VMs I've now resorted to using a native machines and it seems to have resolved itself. Thank you.

idata · ‎08-18-2017

@elie You're welcomed. Glad to hear you got it working.