Hello,
I've compiled the HDF5 library with the most up to date (to this time) intel fortran.
With the --enable-production enabled, when doing the "make check", one of the tests will fail with a very bizarre behaviour.
============================
Fortran API: fortranlib_test Test Log
============================
==========================
FORTRAN tests
==========================
FORTRANLIB_TEST is linked with HDF5 Library version 1.8 release 11
Mounting test PASSED
Reopen test PASSED
File open/close test PASSED
File free space test PASSED
Dataset test PASSED
Extendible dataset test PASSED
Basic dataspace test PASSED
Reference to object test PASSED
Reference to dataset region test PASSED
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
lt-fortranlib_tes 000000000049BC99 Unknown Unknown Unknown
lt-fortranlib_tes 000000000049A610 Unknown Unknown Unknown
lt-fortranlib_tes 00000000004703C2 Unknown Unknown Unknown
lt-fortranlib_tes 00000000004562D3 Unknown Unknown Unknown
lt-fortranlib_tes 000000000042C95B Unknown Unknown Unknown
libpthread.so.0 0000003B1C40EFA0 Unknown Unknown Unknown
libhdf5_fortran.s 00007FB43829BAAC h5sselect_hypersl 993 H5Sf.c
libhdf5_fortran.s 00007FB43828F547 h5s_mp_h5sselect_ 1332 H5Sff.f90
lt-fortranlib_tes 000000000041EC68 test_basic_select 905 tH5Sselect.f90
lt-fortranlib_tes 000000000040D567 MAIN__ 129 fortranlib_test.f90
lt-fortranlib_tes 000000000040D1B6 Unknown Unknown Unknown
libc.so.6 0000003B1BC21B75 Unknown Unknown Unknown
lt-fortranlib_tes 000000000040D0A9 Unknown Unknown Unknown
I found the the subroutine nh5sselect_hyperslab_c is causing the SIGSEGV due to being executed "twice", despite it being called only one in the test code, and the second "call" do not have all the arguments, causing the problem.
In the HDF5 list others have reported the same problem with Intel 14, both on Linux and MacOSX.
If I disable production, than the tests start to fail when checking the C library (I'm also using icc 14).
A test made by kyle kanos (HDF list) with the intel 12.1 show no problems. My experience with the 11.1 version also is positive (no problems).
連結已複製
I suspect you didn't provide enough information for an adequate answer. If it's a problem with a specific compiler release, the 14.0 update 1 (or the final 13.1) may be more satisfactory than the initial 14.0.
I was able to reproduce the SIGSEGV with ifort 14.0.1.106 Build 20131008 and both hdf5-1.8.11 and hdf5-1.8.12 packages. I tested with the latest release, ifort 14.0.2.144 Build 20140120, and there are no issues. Looks like it is fixed in SP1 Update 2. Thanks for your report.
