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Job terminates abnormally on HPC using intel mpi

Saxena__Raghav
Beginner
‎03-08-2019 12:28 AM
1,367 Views

Hello all,

I have recently installed a program cp2k on HPC using "Intel(R) Parallel Studio XE 2017 Update 4 for Linux", after successful installation when I'm running the executable using mpirun -machinefile $PBS_NODEFILE -n 40 ./cp2k $var >& out I get the following error message at the end of the output file and my job terminates:-

rank = 33, revents = 25, state = 8
Assertion failed in file ../../src/mpid/ch3/channels/nemesis/netmod/tcp/socksm.c at line 2988: (it_plfd->revents & POLLERR) == 0
internal ABORT - process 7

I'm using the following JOB script :-

#!/bin/bash
#PBS -N test
#PBS -q mini
#PBS -l nodes=2:ppn=20
cd $PBS_O_WORKDIR
export I_MPI_FABRICS=shm:tcp
export I_MPI_MPD_TMPDIR /scratch/$USER
EXEC=~/cp2k-6.1/exe/Linux-x86-64-intelx/cp2k.popt
cp $EXEC cp2k
mpirun -machinefile $PBS_NODEFILE -n 40 ./cp2k $var >& out
rm cp2k

I shall be grateful for the help.

Thank you,
Raghav

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