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Pana_T_
Beginner
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Compiling R 3.1.1 with MKL - undefined reference to symbol '__kmpc_end@@VERSION'

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Hello,

I need to compile R with shared library (--enable-R-shlib) in order to use a specific IDE (rstudio) and I am running into trouble. Hopefully I'll be able to get some help from you.

I previously had a working installation of R 3.1.1 (without shared library) compiled with ICC and MKL (Composer XE 2013 SP 1.3.174) as follows:

$source /opt/intel/composerxe/bin/compilervars.sh intel64
$export CC="icc"
$export CXX="icpc"
$export AR="xiar"
$export LD="xild"
$export CFLAGS="-O3 -ipo -openmp -xHost -multiple-processes"
$export CXXFLAGS="-O3 -ipo -openmp -xHost -multiple-processes"
$export MKL="-lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread"
$./configure --with-lapack --with-blas="$MKL" --build="x86_64-linux-gnu" --host="x86_64-linux-gnu" > log_cfg
$make > log_make_out 2> log_make_err
#make install

When I run the commands above the compilation is successful and log_make_err is empty at the end of the process.

However, as I said before, I now need to compile R with shared library (--enable-R-shlib). Therefore, I tried to use the exact same commands as before and changed the configure line to:

$./configure --with-lapack --with-blas="$MKL" --build="x86_64-linux-gnu" --host="x86_64-linux-gnu" --enable-R-shlib

In this case, the compilation is not successful and log_make_err contains the following:

ld: /tmp/ipo_iccUpPSPh.o: undefined reference to symbol '__kmpc_end@@VERSION'
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libiomp5.so: error adding symbols: DSO missing from command line
make[3]: *** [R.bin] Error 1
make[2]: *** Error 2
make[1]: *** Error 1
make: *** Error 1

When I run diff on the output of the configure script for each case, nothing strange shows up:

753c753
<   Options enabled:           R profiling
---
>   Options enabled:           shared R library, R profiling

Should it be important, I include all output and error logs below. Thank you very much in advance for your help.

############################ [ ./configure output log (with --enable-R-shlib) ] ############################

checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /bin/pwd
checking whether builddir is srcdir... yes
checking for working aclocal... found
checking for working autoconf... found
checking for working automake... found
checking for working autoheader... found
checking for gawk... no
checking for mawk... mawk
checking whether ln -s works... yes
checking for bison... bison -y
checking for xiar... xiar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /bin/sed
checking for which... /usr/bin/which
checking for less... /usr/bin/less
checking for gtar... no
checking for gnutar... no
checking for tar... /bin/tar
checking for tex... /usr/bin/tex
checking for pdftex... /usr/bin/pdftex
checking for pdflatex... /usr/bin/pdflatex
checking for makeindex... /usr/bin/makeindex
checking for makeinfo... /usr/bin/makeinfo
checking whether makeinfo version is at least 4.7... yes
checking for ginstall-info... /usr/bin/ginstall-info
checking for texi2dvi... /usr/bin/texi2dvi
checking for kpsewhich... /usr/bin/kpsewhich
checking for latex inconsolata package... found zi4.sty
checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /bin/gzip
checking for bzip2... /bin/bzip2
checking for firefox... /usr/bin/firefox
using default browser ... /usr/bin/firefox
checking for acroread... no
checking for acroread4... no
checking for xdg-open... /usr/bin/xdg-open
checking for notangle... false
checking for realpath... false
checking for pkg-config... /usr/bin/pkg-config
checking for x86_64-linux-gnu-gcc... icc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether icc accepts -g... yes
checking for icc option to accept ISO C89... none needed
checking how to run the C preprocessor... icc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether icc needs -traditional... no
checking how to run the C preprocessor... icc -E
checking for gfortran... gfortran
checking for x86_64-linux-gnu-g77... (cached) gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU C++ compiler... yes
checking whether icpc accepts -g... yes
checking how to run the C++ preprocessor... icpc -E
checking whether __attribute__((visibility())) is supported... yes
checking whether icc accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for x86_64-linux-gnu-gcc... x86_64-linux-gnu-gcc
checking whether we are using the GNU Objective C compiler... no
checking whether x86_64-linux-gnu-gcc accepts -g... no
checking for Objective C++ compiler... trying some possibilities
checking whether icpc can compile ObjC++... yes
icpc
checking for a sed that does not truncate output... (cached) /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by icc... xild
checking if the linker (xild) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for xild option to reload object files... -r
checking for x86_64-linux-gnu-objdump... x86_64-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-linux-gnu-ar... (cached) xiar
checking for x86_64-linux-gnu-strip... x86_64-linux-gnu-strip
checking for x86_64-linux-gnu-ranlib... x86_64-linux-gnu-ranlib
checking command to parse /usr/bin/nm -B output from icc object... failed
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether icpc accepts -g... (cached) yes
checking how to run the C++ preprocessor... icpc -E
checking for x86_64-linux-gnu-g77... (cached) gfortran
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if icc supports -fno-rtti -fno-exceptions... yes
checking for icc option to produce PIC... -fPIC -DPIC
checking if icc PIC flag -fPIC -DPIC works... yes
checking if icc static flag -static works... yes
checking if icc supports -c -o file.o... yes
checking if icc supports -c -o file.o... (cached) yes
checking whether the icc linker (xild) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by icpc... xild
checking if the linker (xild) is GNU ld... yes
checking whether the icpc linker (xild) supports shared libraries... yes
checking for icpc option to produce PIC... -fPIC -DPIC
checking if icpc PIC flag -fPIC -DPIC works... yes
checking if icpc static flag -static works... yes
checking if icpc supports -c -o file.o... yes
checking if icpc supports -c -o file.o... (cached) yes
checking whether the icpc linker (xild) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (xild) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking whether rl_completion_matches exists and is declared... yes
checking for ANSI C header files... (cached) yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dl.h usability... no
checking dl.h presence... no
checking for dl.h... no
checking for dlfcn.h... (cached) yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
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checking floatingpoint.h usability... no
checking floatingpoint.h presence... no
checking for floatingpoint.h... no
checking fpu_control.h usability... yes
checking fpu_control.h presence... yes
checking for fpu_control.h... yes
checking glob.h usability... yes
checking glob.h presence... yes
checking for glob.h... yes
checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking langinfo.h usability... yes
checking langinfo.h presence... yes
checking for langinfo.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking utime.h usability... yes
checking utime.h presence... yes
checking for utime.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking return type of signal handlers... void
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for icc option to accept ISO C99... -std=gnu99
checking for icc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99
checking for inline... inline
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of double... 8
checking size of size_t... 8
checking size of long double... 16
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether icc -std=gnu99 supports -c -o FILE.lo... yes
checking for icc -std=gnu99 option to support OpenMP... none needed
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/local/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64 -L/opt/intel/composer_xe_2013_sp1.3.174/ipp/../compiler/lib/intel64 -L/opt/intel/composer_xe_2013_sp1.3.174/ipp/lib/intel64 -L/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64 -L/opt/intel/composer_xe_2013_sp1.3.174/tbb/lib/intel64/gcc4.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../.. -lgfortran -lm -lquadmath
checking how to get verbose linking output from icc -std=gnu99... -v
checking for C libraries of icc -std=gnu99...  -L/usr/local/lib -L/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64 -L/opt/intel/composer_xe_2013_sp1.3.174/ipp/../compiler/lib/intel64 -L/opt/intel/composer_xe_2013_sp1.3.174/ipp/lib/intel64 -L/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64 -L/opt/intel/composer_xe_2013_sp1.3.174/tbb/lib/intel64/gcc4.4 -L/usr/lib/gcc/x86_64-linux-gnu/4.8/ -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../x86_64-linux-gnu/ -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../../lib/ -L/lib/x86_64-linux-gnu/ -L/lib/../lib64 -L/lib/../lib/ -L/usr/lib/x86_64-linux-gnu/ -L/usr/lib/../lib/ -L/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/ -L/opt/intel/composer_xe_2013_sp1.3.174/ipp/../compiler/lib/intel64/ -L/opt/intel/composer_xe_2013_sp1.3.174/ipp/lib/intel64/ -L/opt/intel/composer_xe_2013_sp1.3.174/mkl/lib/intel64/ -L/opt/intel/composer_xe_2013_sp1.3.174/tbb/lib/intel64/gcc4.4/ -L/usr/lib/gcc/x86_64-linux-gnu/4.8/../../../ -L/lib64 -L/lib/ -L/usr/lib -L/usr/lib/i386-linux-gnu -limf -lsvml -lirng -lm -lipgo -ldecimal -liomp5 -lcilkrts -lstdc++ -lgcc_s -lirc -lpthread -lirc_s -ldl
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and icc -std=gnu99 agree on int and double... yes
checking whether gfortran and icc -std=gnu99 agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether icpc accepts -M for generating dependencies... yes
checking for icpc option to support OpenMP... none needed
checking whether we can compute ObjC Make dependencies... no
checking for ObjC runtime library... 
checking whether x86_64-linux-gnu-gcc accepts -fobjc-exceptions... no
checking whether C runtime needs -D__NO_MATH_INLINES... no
checking for xmkmf... no
checking whether icpc  supports C++11 features by default... no
checking whether icpc  supports C++11 features with -std=c++11... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rint exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking sunmath.h usability... no
checking sunmath.h presence... no
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... no
checking whether mktime works correctly outside 1902-2037... yes
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking for cblas_cdotu_sub in vecLib framework... no
checking for dgemm_ in -lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread... yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking wchar.h usability... yes
checking wchar.h presence... yes
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checking whether mbrtowc exists and is declared... yes
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checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
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checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... no
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
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checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
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checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... no
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checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.5/tclConfig.sh
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checking tcl.h usability... yes
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checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
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checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking tiffio.h usability... yes
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checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
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checking for rpc/xdr.h... yes
checking for XDR support... yes
checking whether zlib support needs to be compiled... yes
checking mmap support for zlib... yes
checking whether bzip2 support needs to be compiled... yes
checking for lzma_version_number in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking whether PCRE support needs to be compiled... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for sys/time.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for lpr... lpr
checking for paperconf... /usr/bin/paperconf
checking for x86_64-linux-gnu-gfortran... x86_64-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether x86_64-linux-gnu-gfortran accepts -g... yes
checking for x86_64-linux-gnu-gfortran... (cached) x86_64-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether x86_64-linux-gnu-gfortran accepts -g... (cached) yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for x86_64-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-linux-gnu-gfortran static flag -static works... yes
checking if x86_64-linux-gnu-gfortran supports -c -o file.o... yes
checking if x86_64-linux-gnu-gfortran supports -c -o file.o... (cached) yes
checking whether the x86_64-linux-gnu-gfortran linker (xild) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for x86_64-linux-gnu-gfortran option to support OpenMP... -fopenmp
checking for recommended packages... yes
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for x86_64-linux-gnu-ranlib... (cached) x86_64-linux-gnu-ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... yes
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking argz.h usability... yes
checking argz.h presence... yes
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.0.2, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for shared library run path origin... done
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
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config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/bzip2/Makefile
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config.status: creating src/library/Recommended/Makefile
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config.status: creating src/library/base/DESCRIPTION
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config.status: creating src/library/compiler/DESCRIPTION
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config.status: creating src/library/grDevices/DESCRIPTION
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config.status: creating src/library/stats4/DESCRIPTION
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config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
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config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
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config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/modules/vfonts/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
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config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
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config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: src/include/config.h is unchanged
config.status: executing libtool commands
config.status: executing stamp-h commands

R is now configured for x86_64-pc-linux-gnu

  Source directory:          .
  Installation directory:    /usr/local

  C compiler:                icc -std=gnu99  -O3 -ipo -openmp -xHost -multiple-processes
  Fortran 77 compiler:       gfortran  -g -O2

  C++ compiler:              icpc  -O3 -ipo -openmp -xHost -multiple-processes
  C++ 11 compiler:           icpc  -std=c++11 -O3 -ipo -openmp -xHost -multiple-processes
  Fortran 90/95 compiler:    x86_64-linux-gnu-gfortran -g -O2
  Obj-C compiler:	     x86_64-linux-gnu-gcc 

  Interfaces supported:      X11, tcltk
  External libraries:        readline, BLAS(generic), LAPACK(in blas), lzma
  Additional capabilities:   PNG, JPEG, TIFF, NLS, cairo
  Options enabled:           shared R library, R profiling

  Recommended packages:      yes

###############################################################################################

############################ [ make output log (with --enable-R-shlib) ] ################################

make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/m4'
make[1]: Nothing to be done for `R'.
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/m4'
make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/tools'
make[1]: Nothing to be done for `R'.
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/tools'
make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/doc'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/doc/html'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/doc/html'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/doc/manual'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/doc/manual'
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/doc'
make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/etc'
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/etc'
make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/share'
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/share'
make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/scripts'
creating src/scripts/R.fe
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/scripts'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/scripts'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/scripts'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/include'
config.status: creating src/include/config.h
config.status: src/include/config.h is unchanged
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/include/R_ext'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/include/R_ext'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/include'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/bzip2'
making blocksort.d from blocksort.c
making bzlib.d from bzlib.c
making bzcompress.d from bzcompress.c
making crctable.d from crctable.c
making decompress.d from decompress.c
making huffman.d from huffman.c
making randtable.d from randtable.c
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/bzip2'
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c blocksort.c -o blocksort.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c bzlib.c -o bzlib.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c bzcompress.c -o bzcompress.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c crctable.c -o crctable.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c decompress.c -o decompress.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c huffman.c -o huffman.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c randtable.c -o randtable.o
rm -f libbz2.a
xiar cr libbz2.a blocksort.o bzlib.o bzcompress.o crctable.o decompress.o huffman.o randtable.o
x86_64-linux-gnu-ranlib libbz2.a
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/bzip2'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/bzip2'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/pcre'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/pcre'
making pcre_chartables.d from pcre_chartables.c
making pcre_compile.d from pcre_compile.c
making pcre_config.d from pcre_config.c
making pcre_exec.d from pcre_exec.c
making pcre_fullinfo.d from pcre_fullinfo.c
making pcre_get.d from pcre_get.c
making pcre_globals.d from pcre_globals.c
making pcre_jit_compile.d from pcre_jit_compile.c
making pcre_maketables.d from pcre_maketables.c
making pcre_newline.d from pcre_newline.c
making pcre_ord2utf8.d from pcre_ord2utf8.c
making pcre_refcount.d from pcre_refcount.c
making pcre_study.d from pcre_study.c
making pcre_tables.d from pcre_tables.c
making pcre_ucd.d from pcre_ucd.c
making pcre_valid_utf8.d from pcre_valid_utf8.c
making pcre_version.d from pcre_version.c
making pcre_xclass.d from pcre_xclass.c
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/pcre'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/pcre'
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_chartables.c -o pcre_chartables.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_compile.c -o pcre_compile.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_config.c -o pcre_config.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_exec.c -o pcre_exec.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_fullinfo.c -o pcre_fullinfo.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_get.c -o pcre_get.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_globals.c -o pcre_globals.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_jit_compile.c -o pcre_jit_compile.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_maketables.c -o pcre_maketables.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_newline.c -o pcre_newline.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_ord2utf8.c -o pcre_ord2utf8.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_refcount.c -o pcre_refcount.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_study.c -o pcre_study.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_tables.c -o pcre_tables.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_ucd.c -o pcre_ucd.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_valid_utf8.c -o pcre_valid_utf8.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_version.c -o pcre_version.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c pcre_xclass.c -o pcre_xclass.o
rm -f libpcre.a
xiar cr libpcre.a pcre_chartables.o pcre_compile.o pcre_config.o pcre_exec.o pcre_fullinfo.o pcre_get.o pcre_globals.o pcre_jit_compile.o pcre_maketables.o pcre_newline.o pcre_ord2utf8.o pcre_refcount.o pcre_study.o pcre_tables.o pcre_ucd.o pcre_valid_utf8.o pcre_version.o pcre_xclass.o
x86_64-linux-gnu-ranlib libpcre.a
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/pcre'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/pcre'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/zlib'
making adler32.d from adler32.c
making compress.d from compress.c
making crc32.d from crc32.c
making deflate.d from deflate.c
making infback.d from infback.c
making inffast.d from inffast.c
making inflate.d from inflate.c
making inftrees.d from inftrees.c
making trees.d from trees.c
making uncompr.d from uncompr.c
making zutil.d from zutil.c
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/zlib'
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c adler32.c -o adler32.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c compress.c -o compress.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c crc32.c -o crc32.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c deflate.c -o deflate.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c infback.c -o infback.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c inffast.c -o inffast.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c inflate.c -o inflate.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c inftrees.c -o inftrees.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c trees.c -o trees.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c uncompr.c -o uncompr.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c zutil.c -o zutil.o
rm -f libz.a
xiar cr libz.a adler32.o compress.o crc32.o deflate.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o
x86_64-linux-gnu-ranlib libz.a
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/zlib'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/zlib'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/tre'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/tre'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/tre'
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c regcomp.c -o regcomp.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c regerror.c -o regerror.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c regexec.c -o regexec.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c tre-ast.c -o tre-ast.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c tre-compile.c -o tre-compile.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c tre-match-approx.c -o tre-match-approx.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c tre-match-backtrack.c -o tre-match-backtrack.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c tre-match-parallel.c -o tre-match-parallel.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c tre-mem.c -o tre-mem.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c tre-parse.c -o tre-parse.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c tre-stack.c -o tre-stack.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c xmalloc.c -o xmalloc.o
rm -f libtre.a
xiar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
x86_64-linux-gnu-ranlib libtre.a
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/tre'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/tre'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/appl'
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c integrate.c -o integrate.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c interv.c -o interv.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c maxcol.c -o maxcol.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c optim.c -o optim.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pretty.c -o pretty.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c uncmin.c -o uncmin.o
gfortran  -fopenmp -fpic  -g -O2  -c dchdc.f -o dchdc.o
gfortran  -fopenmp -fpic  -g -O2  -c dpbfa.f -o dpbfa.o
gfortran  -fopenmp -fpic  -g -O2  -c dpbsl.f -o dpbsl.o
gfortran  -fopenmp -fpic  -g -O2  -c dpoco.f -o dpoco.o
gfortran  -fopenmp -fpic  -g -O2  -c dpodi.f -o dpodi.o
gfortran  -fopenmp -fpic  -g -O2  -c dpofa.f -o dpofa.o
gfortran  -fopenmp -fpic  -g -O2  -c dposl.f -o dposl.o
gfortran  -fopenmp -fpic  -g -O2  -c dqrdc.f -o dqrdc.o
gfortran  -fopenmp -fpic  -g -O2  -c dqrdc2.f -o dqrdc2.o
gfortran  -fopenmp -fpic  -g -O2  -c dqrls.f -o dqrls.o
gfortran  -fopenmp -fpic  -g -O2  -c dqrsl.f -o dqrsl.o
gfortran  -fopenmp -fpic  -g -O2  -c dqrutl.f -o dqrutl.o
gfortran  -fopenmp -fpic  -g -O2  -c dsvdc.f -o dsvdc.o
gfortran  -fopenmp -fpic  -g -O2  -c dtrco.f -o dtrco.o
gfortran  -fopenmp -fpic  -g -O2  -c dtrsl.f -o dtrsl.o
rm -f libappl.a
xiar cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o 
x86_64-linux-gnu-ranlib libappl.a
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/appl'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/appl'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/nmath'
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c mlutils.c -o mlutils.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c d1mach.c -o d1mach.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c i1mach.c -o i1mach.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c fmax2.c -o fmax2.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c fmin2.c -o fmin2.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c fprec.c -o fprec.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c fround.c -o fround.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ftrunc.c -o ftrunc.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c sign.c -o sign.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c fsign.c -o fsign.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c imax2.c -o imax2.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c imin2.c -o imin2.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c chebyshev.c -o chebyshev.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c log1p.c -o log1p.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c expm1.c -o expm1.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c lgammacor.c -o lgammacor.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c gammalims.c -o gammalims.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c stirlerr.c -o stirlerr.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c bd0.c -o bd0.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c gamma.c -o gamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c lgamma.c -o lgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c gamma_cody.c -o gamma_cody.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c beta.c -o beta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c lbeta.c -o lbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c polygamma.c -o polygamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c cospi.c -o cospi.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c bessel_i.c -o bessel_i.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c bessel_j.c -o bessel_j.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c bessel_k.c -o bessel_k.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c bessel_y.c -o bessel_y.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c choose.c -o choose.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c snorm.c -o snorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c sexp.c -o sexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dgamma.c -o dgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pgamma.c -o pgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qgamma.c -o qgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rgamma.c -o rgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dbeta.c -o dbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pbeta.c -o pbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qbeta.c -o qbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rbeta.c -o rbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dunif.c -o dunif.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c punif.c -o punif.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qunif.c -o qunif.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c runif.c -o runif.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dnorm.c -o dnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pnorm.c -o pnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qnorm.c -o qnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rnorm.c -o rnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dlnorm.c -o dlnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c plnorm.c -o plnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qlnorm.c -o qlnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rlnorm.c -o rlnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c df.c -o df.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pf.c -o pf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qf.c -o qf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rf.c -o rf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dnf.c -o dnf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dt.c -o dt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pt.c -o pt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qt.c -o qt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rt.c -o rt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dnt.c -o dnt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dchisq.c -o dchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pchisq.c -o pchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qchisq.c -o qchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rchisq.c -o rchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rnchisq.c -o rnchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dbinom.c -o dbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pbinom.c -o pbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qbinom.c -o qbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rbinom.c -o rbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rmultinom.c -o rmultinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dcauchy.c -o dcauchy.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pcauchy.c -o pcauchy.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qcauchy.c -o qcauchy.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rcauchy.c -o rcauchy.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dexp.c -o dexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pexp.c -o pexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qexp.c -o qexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rexp.c -o rexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dgeom.c -o dgeom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pgeom.c -o pgeom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qgeom.c -o qgeom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rgeom.c -o rgeom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dhyper.c -o dhyper.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c phyper.c -o phyper.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qhyper.c -o qhyper.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rhyper.c -o rhyper.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dnbinom.c -o dnbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pnbinom.c -o pnbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qnbinom.c -o qnbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rnbinom.c -o rnbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dpois.c -o dpois.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ppois.c -o ppois.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qpois.c -o qpois.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rpois.c -o rpois.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dweibull.c -o dweibull.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pweibull.c -o pweibull.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qweibull.c -o qweibull.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rweibull.c -o rweibull.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dlogis.c -o dlogis.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c plogis.c -o plogis.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qlogis.c -o qlogis.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rlogis.c -o rlogis.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dnchisq.c -o dnchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pnchisq.c -o pnchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qnchisq.c -o qnchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dnbeta.c -o dnbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pnbeta.c -o pnbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qnbeta.c -o qnbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pnf.c -o pnf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pnt.c -o pnt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qnf.c -o qnf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qnt.c -o qnt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ptukey.c -o ptukey.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qtukey.c -o qtukey.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c toms708.c -o toms708.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c wilcox.c -o wilcox.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c signrank.c -o signrank.o
rm -rf libnmath.a
xiar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
x86_64-linux-gnu-ranlib libnmath.a
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/nmath'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/nmath'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
config.status: creating src/unix/Makefile
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c Rembedded.c -o Rembedded.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dynload.c -o dynload.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c system.c -o system.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c sys-unix.c -o sys-unix.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c sys-std.c -o sys-std.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c X11.c -o X11.o
rm -rf libunix.a
xiar cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
x86_64-linux-gnu-ranlib libunix.a
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -L/usr/local/lib -DR_HOME='"/home/iwtcr/tmp/R-3.1.1"' \
	  -o Rscript ./Rscript.c
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/main'
config.status: creating src/main/Makefile
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/main'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/main'
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making vfonts.d from vfonts.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/main'
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c CommandLineArgs.c -o CommandLineArgs.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c Rdynload.c -o Rdynload.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c Renviron.c -o Renviron.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c RNG.c -o RNG.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c agrep.c -o agrep.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c apply.c -o apply.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c arithmetic.c -o arithmetic.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c array.c -o array.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c attrib.c -o attrib.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c bind.c -o bind.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c builtin.c -o builtin.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c character.c -o character.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c coerce.c -o coerce.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c colors.c -o colors.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c complex.c -o complex.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c connections.c -o connections.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c context.c -o context.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c cum.c -o cum.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dcf.c -o dcf.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c datetime.c -o datetime.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c debug.c -o debug.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c deparse.c -o deparse.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c devices.c -o devices.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dotcode.c -o dotcode.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dounzip.c -o dounzip.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dstruct.c -o dstruct.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c duplicate.c -o duplicate.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c edit.c -o edit.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c engine.c -o engine.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c envir.c -o envir.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c errors.c -o errors.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c eval.c -o eval.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c format.c -o format.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c gevents.c -o gevents.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c gram.c -o gram.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c gram-ex.c -o gram-ex.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c graphics.c -o graphics.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c grep.c -o grep.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c identical.c -o identical.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c inlined.c -o inlined.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c inspect.c -o inspect.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c internet.c -o internet.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c iosupport.c -o iosupport.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c lapack.c -o lapack.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c list.c -o list.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c localecharset.c -o localecharset.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c logic.c -o logic.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c main.c -o main.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c mapply.c -o mapply.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c match.c -o match.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c memory.c -o memory.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c names.c -o names.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c objects.c -o objects.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c options.c -o options.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c paste.c -o paste.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c platform.c -o platform.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c plot.c -o plot.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c plot3d.c -o plot3d.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c plotmath.c -o plotmath.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c print.c -o print.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c printarray.c -o printarray.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c printvector.c -o printvector.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c printutils.c -o printutils.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qsort.c -o qsort.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c random.c -o random.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c raw.c -o raw.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c registration.c -o registration.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c relop.c -o relop.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rlocale.c -o rlocale.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c saveload.c -o saveload.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c scan.c -o scan.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c seq.c -o seq.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c serialize.c -o serialize.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c sort.c -o sort.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c source.c -o source.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c split.c -o split.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c sprintf.c -o sprintf.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c startup.c -o startup.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c subassign.c -o subassign.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c subscript.c -o subscript.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c subset.c -o subset.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c summary.c -o summary.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c sysutils.c -o sysutils.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c times.c -o times.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c unique.c -o unique.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c util.c -o util.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c version.c -o version.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c vfonts.c -o vfonts.o
gfortran  -fopenmp -fpic  -g -O2  -c xxxpr.f -o xxxpr.o
icc -std=gnu99 -shared  -L/usr/local/lib  -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o vfonts.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a ../extra/tre/libtre.a     -lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lgfortran -lm -lquadmath   -lreadline  -llzma -lrt -ldl -lm  
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/main'
mkdir -p -- /home/iwtcr/tmp/R-3.1.1/lib
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/main'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/main'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/main'
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c Rmain.c -o Rmain.o
icc -std=gnu99 -Wl,--export-dynamic   -L/usr/local/lib -o R.bin Rmain.o  -L../../lib -lR 
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/main'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/main'
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src'

###############################################################################################

############################ [ make error log (with --enable-R-shlib) ] ################################

ld: /tmp/ipo_iccUpPSPh.o: undefined reference to symbol '__kmpc_end@@VERSION'

/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libiomp5.so: error adding symbols: DSO missing from command line
make[3]: *** [R.bin] Error 1
make[2]: ***  Error 2
make[1]: ***  Error 1
make: ***  Error 1

###############################################################################################

############################ [ ./configure output (without --enable-R-shlib) ] ############################

checking build system type... x86_64-pc-linux-gnu

checking host system type... x86_64-pc-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
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checking for Objective C++ compiler... trying some possibilities
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icpc
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checking if icpc PIC flag -fPIC -DPIC works... yes
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checking size of int... 4
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checking how to get verbose linking output from icc -std=gnu99... -v
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checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rint exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking sunmath.h usability... no
checking sunmath.h presence... no
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... no
checking whether mktime works correctly outside 1902-2037... yes
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking for cblas_cdotu_sub in vecLib framework... no
checking for dgemm_ in -lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread... yes
checking whether double complex BLAS can be used... yes
checking whether the BLAS is complete... yes
checking for dpstrf_... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... no
checking for X... libraries , headers 
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... no
checking X11/Xmu/Atoms.h presence... no
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... yes
checking whether cairo including pango is >= 1.2 and works... yes
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... /usr/lib/tcl8.5/tclConfig.sh
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... /usr/lib/tk8.5/tkConfig.sh
checking tcl.h usability... yes
checking tcl.h presence... yes
checking for tcl.h... yes
checking tk.h usability... yes
checking tk.h presence... yes
checking for tk.h... yes
checking whether compiling/linking Tcl/Tk code works... yes
checking for BSD networking... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking for main in -lz... yes
checking if libpng version >= 1.2.7... yes
checking for png_create_write_struct in -lpng... yes
checking tiffio.h usability... yes
checking tiffio.h presence... yes
checking for tiffio.h... yes
checking for TIFFOpen in -ltiff... yes
checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking whether zlib support needs to be compiled... yes
checking mmap support for zlib... yes
checking whether bzip2 support needs to be compiled... yes
checking for lzma_version_number in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking if lzma version >= 5.0.3... yes
checking whether PCRE support needs to be compiled... yes
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for sys/time.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for lpr... lpr
checking for paperconf... /usr/bin/paperconf
checking for x86_64-linux-gnu-gfortran... x86_64-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether x86_64-linux-gnu-gfortran accepts -g... yes
checking for x86_64-linux-gnu-gfortran... (cached) x86_64-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether x86_64-linux-gnu-gfortran accepts -g... (cached) yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for x86_64-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-linux-gnu-gfortran static flag -static works... yes
checking if x86_64-linux-gnu-gfortran supports -c -o file.o... yes
checking if x86_64-linux-gnu-gfortran supports -c -o file.o... (cached) yes
checking whether the x86_64-linux-gnu-gfortran linker (xild) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for x86_64-linux-gnu-gfortran option to support OpenMP... -fopenmp
checking for recommended packages... yes
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for x86_64-linux-gnu-ranlib... (cached) x86_64-linux-gnu-ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... yes
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking argz.h usability... yes
checking argz.h presence... yes
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached) 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... bison
checking version of bison... 3.0.2, ok
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for shared library run path origin... done
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

using as R_SHELL for scripts ... /bin/bash
configure: creating ./config.status
config.status: creating Makeconf
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config.status: src/include/config.h is unchanged
config.status: executing libtool commands
config.status: executing stamp-h commands

R is now configured for x86_64-pc-linux-gnu

  Source directory:          .
  Installation directory:    /usr/local

  C compiler:                icc -std=gnu99  -O3 -ipo -openmp -xHost -multiple-processes
  Fortran 77 compiler:       gfortran  -g -O2

  C++ compiler:              icpc  -O3 -ipo -openmp -xHost -multiple-processes
  C++ 11 compiler:           icpc  -std=c++11 -O3 -ipo -openmp -xHost -multiple-processes
  Fortran 90/95 compiler:    x86_64-linux-gnu-gfortran -g -O2
  Obj-C compiler:	     x86_64-linux-gnu-gcc 

  Interfaces supported:      X11, tcltk
  External libraries:        readline, BLAS(generic), LAPACK(in blas), lzma
  Additional capabilities:   PNG, JPEG, TIFF, NLS, cairo
  Options enabled:           R profiling

  Recommended packages:      yes

###############################################################################################

############################ [ make output log (without --enable-R-shlib) ] ################################

make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/m4'

make[1]: Nothing to be done for `R'.
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/m4'
make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/tools'
make[1]: Nothing to be done for `R'.
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/tools'
make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/doc'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/doc/html'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/doc/html'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/doc/manual'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/doc/manual'
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/doc'
make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/etc'
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/etc'
make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/share'
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/share'
make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/scripts'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/scripts'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/scripts'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/scripts'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/include'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/include/R_ext'
make[3]: Nothing to be done for `R'.
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/include/R_ext'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/include'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/bzip2'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/bzip2'
make[4]: `libbz2.a' is up to date.
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/bzip2'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/bzip2'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/pcre'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/pcre'
make[4]: `Makedeps' is up to date.
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/pcre'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/pcre'
rm -f libpcre.a
xiar cr libpcre.a pcre_chartables.o pcre_compile.o pcre_config.o pcre_exec.o pcre_fullinfo.o pcre_get.o pcre_globals.o pcre_jit_compile.o pcre_maketables.o pcre_newline.o pcre_ord2utf8.o pcre_refcount.o pcre_study.o pcre_tables.o pcre_ucd.o pcre_valid_utf8.o pcre_version.o pcre_xclass.o
x86_64-linux-gnu-ranlib libpcre.a
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/pcre'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/pcre'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/zlib'
making adler32.d from adler32.c
making compress.d from compress.c
making crc32.d from crc32.c
making deflate.d from deflate.c
making infback.d from infback.c
making inffast.d from inffast.c
making inflate.d from inflate.c
making inftrees.d from inftrees.c
making trees.d from trees.c
making uncompr.d from uncompr.c
making zutil.d from zutil.c
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/zlib'
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -fpic -c adler32.c -o adler32.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -fpic -c compress.c -o compress.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -fpic -c crc32.c -o crc32.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -fpic -c deflate.c -o deflate.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -fpic -c infback.c -o infback.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -fpic -c inffast.c -o inffast.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -fpic -c inflate.c -o inflate.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -fpic -c inftrees.c -o inftrees.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -fpic -c trees.c -o trees.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -fpic -c uncompr.c -o uncompr.o
icc -std=gnu99 -I.  -DUSE_MMAP -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -fpic -c zutil.c -o zutil.o
rm -f libz.a
xiar cr libz.a adler32.o compress.o crc32.o deflate.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o
x86_64-linux-gnu-ranlib libz.a
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/zlib'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/zlib'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/tre'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/tre'
making regcomp.d from regcomp.c
making regerror.d from regerror.c
making regexec.d from regexec.c
making tre-ast.d from tre-ast.c
making tre-compile.d from tre-compile.c
making tre-match-approx.d from tre-match-approx.c
making tre-match-backtrack.d from tre-match-backtrack.c
making tre-match-parallel.d from tre-match-parallel.c
making tre-mem.d from tre-mem.c
making tre-parse.d from tre-parse.c
making tre-stack.d from tre-stack.c
making xmalloc.d from xmalloc.c
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/tre'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/extra/tre'
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c regcomp.c -o regcomp.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c regerror.c -o regerror.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c regexec.c -o regexec.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c tre-ast.c -o tre-ast.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c tre-compile.c -o tre-compile.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c tre-match-approx.c -o tre-match-approx.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c tre-match-backtrack.c -o tre-match-backtrack.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c tre-match-parallel.c -o tre-match-parallel.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c tre-mem.c -o tre-mem.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c tre-parse.c -o tre-parse.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c tre-stack.c -o tre-stack.o
icc -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c xmalloc.c -o xmalloc.o
rm -f libtre.a
xiar cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
x86_64-linux-gnu-ranlib libtre.a
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/tre'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra/tre'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/extra'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/appl'
making integrate.d from integrate.c
making interv.d from interv.c
making maxcol.d from maxcol.c
making optim.d from optim.c
making pretty.d from pretty.c
making uncmin.d from uncmin.c
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/appl'
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c integrate.c -o integrate.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c interv.c -o interv.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c maxcol.c -o maxcol.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c optim.c -o optim.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pretty.c -o pretty.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c uncmin.c -o uncmin.o
gfortran  -fopenmp  -g -O2  -c dchdc.f -o dchdc.o
gfortran  -fopenmp  -g -O2  -c dpbfa.f -o dpbfa.o
gfortran  -fopenmp  -g -O2  -c dpbsl.f -o dpbsl.o
gfortran  -fopenmp  -g -O2  -c dpoco.f -o dpoco.o
gfortran  -fopenmp  -g -O2  -c dpodi.f -o dpodi.o
gfortran  -fopenmp  -g -O2  -c dpofa.f -o dpofa.o
gfortran  -fopenmp  -g -O2  -c dposl.f -o dposl.o
gfortran  -fopenmp  -g -O2  -c dqrdc.f -o dqrdc.o
gfortran  -fopenmp  -g -O2  -c dqrdc2.f -o dqrdc2.o
gfortran  -fopenmp  -g -O2  -c dqrls.f -o dqrls.o
gfortran  -fopenmp  -g -O2  -c dqrsl.f -o dqrsl.o
gfortran  -fopenmp  -g -O2  -c dqrutl.f -o dqrutl.o
gfortran  -fopenmp  -g -O2  -c dsvdc.f -o dsvdc.o
gfortran  -fopenmp  -g -O2  -c dtrco.f -o dtrco.o
gfortran  -fopenmp  -g -O2  -c dtrsl.f -o dtrsl.o
rm -f libappl.a
xiar cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o 
x86_64-linux-gnu-ranlib libappl.a
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/appl'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/appl'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/nmath'
making mlutils.d from mlutils.c
making d1mach.d from d1mach.c
making i1mach.d from i1mach.c
making fmax2.d from fmax2.c
making fmin2.d from fmin2.c
making fprec.d from fprec.c
making fround.d from fround.c
making ftrunc.d from ftrunc.c
making sign.d from sign.c
making fsign.d from fsign.c
making imax2.d from imax2.c
making imin2.d from imin2.c
making chebyshev.d from chebyshev.c
making log1p.d from log1p.c
making expm1.d from expm1.c
making lgammacor.d from lgammacor.c
making gammalims.d from gammalims.c
making stirlerr.d from stirlerr.c
making bd0.d from bd0.c
making gamma.d from gamma.c
making lgamma.d from lgamma.c
making gamma_cody.d from gamma_cody.c
making beta.d from beta.c
making lbeta.d from lbeta.c
making polygamma.d from polygamma.c
making cospi.d from cospi.c
making bessel_i.d from bessel_i.c
making bessel_j.d from bessel_j.c
making bessel_k.d from bessel_k.c
making bessel_y.d from bessel_y.c
making choose.d from choose.c
making snorm.d from snorm.c
making sexp.d from sexp.c
making dgamma.d from dgamma.c
making pgamma.d from pgamma.c
making qgamma.d from qgamma.c
making rgamma.d from rgamma.c
making dbeta.d from dbeta.c
making pbeta.d from pbeta.c
making qbeta.d from qbeta.c
making rbeta.d from rbeta.c
making dunif.d from dunif.c
making punif.d from punif.c
making qunif.d from qunif.c
making runif.d from runif.c
making dnorm.d from dnorm.c
making pnorm.d from pnorm.c
making qnorm.d from qnorm.c
making rnorm.d from rnorm.c
making dlnorm.d from dlnorm.c
making plnorm.d from plnorm.c
making qlnorm.d from qlnorm.c
making rlnorm.d from rlnorm.c
making df.d from df.c
making pf.d from pf.c
making qf.d from qf.c
making rf.d from rf.c
making dnf.d from dnf.c
making dt.d from dt.c
making pt.d from pt.c
making qt.d from qt.c
making rt.d from rt.c
making dnt.d from dnt.c
making dchisq.d from dchisq.c
making pchisq.d from pchisq.c
making qchisq.d from qchisq.c
making rchisq.d from rchisq.c
making rnchisq.d from rnchisq.c
making dbinom.d from dbinom.c
making pbinom.d from pbinom.c
making qbinom.d from qbinom.c
making rbinom.d from rbinom.c
making rmultinom.d from rmultinom.c
making dcauchy.d from dcauchy.c
making pcauchy.d from pcauchy.c
making qcauchy.d from qcauchy.c
making rcauchy.d from rcauchy.c
making dexp.d from dexp.c
making pexp.d from pexp.c
making qexp.d from qexp.c
making rexp.d from rexp.c
making dgeom.d from dgeom.c
making pgeom.d from pgeom.c
making qgeom.d from qgeom.c
making rgeom.d from rgeom.c
making dhyper.d from dhyper.c
making phyper.d from phyper.c
making qhyper.d from qhyper.c
making rhyper.d from rhyper.c
making dnbinom.d from dnbinom.c
making pnbinom.d from pnbinom.c
making qnbinom.d from qnbinom.c
making rnbinom.d from rnbinom.c
making dpois.d from dpois.c
making ppois.d from ppois.c
making qpois.d from qpois.c
making rpois.d from rpois.c
making dweibull.d from dweibull.c
making pweibull.d from pweibull.c
making qweibull.d from qweibull.c
making rweibull.d from rweibull.c
making dlogis.d from dlogis.c
making plogis.d from plogis.c
making qlogis.d from qlogis.c
making rlogis.d from rlogis.c
making dnchisq.d from dnchisq.c
making pnchisq.d from pnchisq.c
making qnchisq.d from qnchisq.c
making dnbeta.d from dnbeta.c
making pnbeta.d from pnbeta.c
making qnbeta.d from qnbeta.c
making pnf.d from pnf.c
making pnt.d from pnt.c
making qnf.d from qnf.c
making qnt.d from qnt.c
making ptukey.d from ptukey.c
making qtukey.d from qtukey.c
making toms708.d from toms708.c
making wilcox.d from wilcox.c
making signrank.d from signrank.c
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/nmath'
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c mlutils.c -o mlutils.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c d1mach.c -o d1mach.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c i1mach.c -o i1mach.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c fmax2.c -o fmax2.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c fmin2.c -o fmin2.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c fprec.c -o fprec.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c fround.c -o fround.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c ftrunc.c -o ftrunc.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c sign.c -o sign.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c fsign.c -o fsign.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c imax2.c -o imax2.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c imin2.c -o imin2.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c chebyshev.c -o chebyshev.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c log1p.c -o log1p.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c expm1.c -o expm1.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c lgammacor.c -o lgammacor.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c gammalims.c -o gammalims.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c stirlerr.c -o stirlerr.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c bd0.c -o bd0.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c gamma.c -o gamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c lgamma.c -o lgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c gamma_cody.c -o gamma_cody.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c beta.c -o beta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c lbeta.c -o lbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c polygamma.c -o polygamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c cospi.c -o cospi.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c bessel_i.c -o bessel_i.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c bessel_j.c -o bessel_j.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c bessel_k.c -o bessel_k.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c bessel_y.c -o bessel_y.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c choose.c -o choose.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c snorm.c -o snorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c sexp.c -o sexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dgamma.c -o dgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pgamma.c -o pgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qgamma.c -o qgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rgamma.c -o rgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dbeta.c -o dbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pbeta.c -o pbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qbeta.c -o qbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rbeta.c -o rbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dunif.c -o dunif.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c punif.c -o punif.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qunif.c -o qunif.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c runif.c -o runif.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dnorm.c -o dnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pnorm.c -o pnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qnorm.c -o qnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rnorm.c -o rnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dlnorm.c -o dlnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c plnorm.c -o plnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qlnorm.c -o qlnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rlnorm.c -o rlnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c df.c -o df.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pf.c -o pf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qf.c -o qf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rf.c -o rf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dnf.c -o dnf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dt.c -o dt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pt.c -o pt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qt.c -o qt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rt.c -o rt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dnt.c -o dnt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dchisq.c -o dchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pchisq.c -o pchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qchisq.c -o qchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rchisq.c -o rchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rnchisq.c -o rnchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dbinom.c -o dbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pbinom.c -o pbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qbinom.c -o qbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rbinom.c -o rbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rmultinom.c -o rmultinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dcauchy.c -o dcauchy.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pcauchy.c -o pcauchy.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qcauchy.c -o qcauchy.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rcauchy.c -o rcauchy.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dexp.c -o dexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pexp.c -o pexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qexp.c -o qexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rexp.c -o rexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dgeom.c -o dgeom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pgeom.c -o pgeom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qgeom.c -o qgeom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rgeom.c -o rgeom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dhyper.c -o dhyper.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c phyper.c -o phyper.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qhyper.c -o qhyper.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rhyper.c -o rhyper.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dnbinom.c -o dnbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pnbinom.c -o pnbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qnbinom.c -o qnbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rnbinom.c -o rnbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dpois.c -o dpois.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c ppois.c -o ppois.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qpois.c -o qpois.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rpois.c -o rpois.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dweibull.c -o dweibull.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pweibull.c -o pweibull.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qweibull.c -o qweibull.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rweibull.c -o rweibull.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dlogis.c -o dlogis.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c plogis.c -o plogis.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qlogis.c -o qlogis.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rlogis.c -o rlogis.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dnchisq.c -o dnchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pnchisq.c -o pnchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qnchisq.c -o qnchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dnbeta.c -o dnbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pnbeta.c -o pnbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qnbeta.c -o qnbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pnf.c -o pnf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c pnt.c -o pnt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qnf.c -o qnf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qnt.c -o qnt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c ptukey.c -o ptukey.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qtukey.c -o qtukey.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c toms708.c -o toms708.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c wilcox.c -o wilcox.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c signrank.c -o signrank.o
rm -rf libnmath.a
xiar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
x86_64-linux-gnu-ranlib libnmath.a
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/nmath'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/nmath'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
config.status: creating src/unix/Makefile
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
making Rembedded.d from Rembedded.c
making dynload.d from dynload.c
making system.d from system.c
making sys-unix.d from sys-unix.c
making sys-std.d from sys-std.c
making X11.d from X11.c
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c Rembedded.c -o Rembedded.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dynload.c -o dynload.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c system.c -o system.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c sys-unix.c -o sys-unix.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c sys-std.c -o sys-std.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c X11.c -o X11.o
rm -rf libunix.a
xiar cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
x86_64-linux-gnu-ranlib libunix.a
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -L/usr/local/lib -DR_HOME='"/home/iwtcr/tmp/R-3.1.1"' \
	  -o Rscript ./Rscript.c
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/unix'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/main'
config.status: creating src/main/Makefile
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/main'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/main'
making CommandLineArgs.d from CommandLineArgs.c
making Rdynload.d from Rdynload.c
making Renviron.d from Renviron.c
making RNG.d from RNG.c
making agrep.d from agrep.c
making apply.d from apply.c
making arithmetic.d from arithmetic.c
making array.d from array.c
making attrib.d from attrib.c
making bind.d from bind.c
making builtin.d from builtin.c
making character.d from character.c
making coerce.d from coerce.c
making colors.d from colors.c
making complex.d from complex.c
making connections.d from connections.c
making context.d from context.c
making cum.d from cum.c
making dcf.d from dcf.c
making datetime.d from datetime.c
making debug.d from debug.c
making deparse.d from deparse.c
making devices.d from devices.c
making dotcode.d from dotcode.c
making dounzip.d from dounzip.c
making dstruct.d from dstruct.c
making duplicate.d from duplicate.c
making edit.d from edit.c
making engine.d from engine.c
making envir.d from envir.c
making errors.d from errors.c
making eval.d from eval.c
making format.d from format.c
making gevents.d from gevents.c
making gram.d from gram.c
making gram-ex.d from gram-ex.c
making graphics.d from graphics.c
making grep.d from grep.c
making identical.d from identical.c
making inlined.d from inlined.c
making inspect.d from inspect.c
making internet.d from internet.c
making iosupport.d from iosupport.c
making lapack.d from lapack.c
making list.d from list.c
making localecharset.d from localecharset.c
making logic.d from logic.c
making main.d from main.c
making mapply.d from mapply.c
making match.d from match.c
making memory.d from memory.c
making names.d from names.c
making objects.d from objects.c
making options.d from options.c
making paste.d from paste.c
making platform.d from platform.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making plotmath.d from plotmath.c
making print.d from print.c
making printarray.d from printarray.c
making printvector.d from printvector.c
making printutils.d from printutils.c
making qsort.d from qsort.c
making random.d from random.c
making raw.d from raw.c
making registration.d from registration.c
making relop.d from relop.c
making rlocale.d from rlocale.c
making saveload.d from saveload.c
making scan.d from scan.c
making seq.d from seq.c
making serialize.d from serialize.c
making sort.d from sort.c
making source.d from source.c
making split.d from split.c
making sprintf.d from sprintf.c
making startup.d from startup.c
making subassign.d from subassign.c
making subscript.d from subscript.c
making subset.d from subset.c
making summary.d from summary.c
making sysutils.d from sysutils.c
making times.d from times.c
making unique.d from unique.c
making util.d from util.c
making version.d from version.c
making vfonts.d from vfonts.c
making Rmain.d from Rmain.c
making alloca.d from alloca.c
making mkdtemp.d from mkdtemp.c
making strdup.d from strdup.c
making strncasecmp.d from strncasecmp.c
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/main'
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c Rmain.c -o Rmain.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c CommandLineArgs.c -o CommandLineArgs.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c Rdynload.c -o Rdynload.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c Renviron.c -o Renviron.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c RNG.c -o RNG.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c agrep.c -o agrep.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c apply.c -o apply.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c arithmetic.c -o arithmetic.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c array.c -o array.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c attrib.c -o attrib.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c bind.c -o bind.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c builtin.c -o builtin.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c character.c -o character.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c coerce.c -o coerce.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c colors.c -o colors.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c complex.c -o complex.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c connections.c -o connections.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c context.c -o context.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c cum.c -o cum.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dcf.c -o dcf.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c datetime.c -o datetime.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c debug.c -o debug.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c deparse.c -o deparse.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c devices.c -o devices.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dotcode.c -o dotcode.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dounzip.c -o dounzip.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c dstruct.c -o dstruct.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c duplicate.c -o duplicate.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c edit.c -o edit.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c engine.c -o engine.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c envir.c -o envir.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c errors.c -o errors.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c eval.c -o eval.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c format.c -o format.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c gevents.c -o gevents.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c gram.c -o gram.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c gram-ex.c -o gram-ex.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c graphics.c -o graphics.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c grep.c -o grep.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c identical.c -o identical.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c inlined.c -o inlined.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c inspect.c -o inspect.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c internet.c -o internet.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c iosupport.c -o iosupport.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c lapack.c -o lapack.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c list.c -o list.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c localecharset.c -o localecharset.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c logic.c -o logic.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c main.c -o main.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c mapply.c -o mapply.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c match.c -o match.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c memory.c -o memory.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c names.c -o names.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c objects.c -o objects.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c options.c -o options.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c paste.c -o paste.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c platform.c -o platform.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c plot.c -o plot.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c plot3d.c -o plot3d.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c plotmath.c -o plotmath.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c print.c -o print.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c printarray.c -o printarray.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c printvector.c -o printvector.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c printutils.c -o printutils.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c qsort.c -o qsort.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c random.c -o random.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c raw.c -o raw.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c registration.c -o registration.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c relop.c -o relop.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c rlocale.c -o rlocale.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c saveload.c -o saveload.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c scan.c -o scan.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c seq.c -o seq.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c serialize.c -o serialize.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c sort.c -o sort.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c source.c -o source.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c split.c -o split.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c sprintf.c -o sprintf.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c startup.c -o startup.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c subassign.c -o subassign.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c subscript.c -o subscript.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c subset.c -o subset.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c summary.c -o summary.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c sysutils.c -o sysutils.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c times.c -o times.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c unique.c -o unique.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c util.c -o util.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c version.c -o version.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H     -O3 -ipo -openmp -xHost -multiple-processes  -c vfonts.c -o vfonts.o
gfortran  -fopenmp  -g -O2  -c xxxpr.f -o xxxpr.o
xiar cr libR.a CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o vfonts.o xxxpr.o   libs/*o
x86_64-linux-gnu-ranlib libR.a
icc -std=gnu99 -Wl,--export-dynamic    -L/usr/local/lib -o R.bin Rmain.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o vfonts.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a ../extra/tre/libtre.a     -lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lgfortran -lm -lquadmath   -lreadline  -llzma -lrt -ldl -lm
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/main'
mkdir -p -- /home/iwtcr/tmp/R-3.1.1/bin/exec
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/main'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/main'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/main'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/modules'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/modules/internet'
making Rhttpd.d from Rhttpd.c
making Rsock.d from Rsock.c
making internet.d from internet.c
making nanoftp.d from nanoftp.c
making nanohttp.d from nanohttp.c
making sock.d from sock.c
making sockconn.d from sockconn.c
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/modules/internet'
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c Rhttpd.c -o Rhttpd.o
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c Rsock.c -o Rsock.o
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c internet.c -o internet.o
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c nanoftp.c -o nanoftp.o
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c nanohttp.c -o nanohttp.o
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c sock.c -o sock.o
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes   -c sockconn.c -o sockconn.o
icc -std=gnu99 -shared -L/usr/local/lib -o internet.so Rhttpd.o Rsock.o internet.o nanoftp.o nanohttp.o sock.o sockconn.o   
make[5]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/modules/internet'
mkdir -p -- /home/iwtcr/tmp/R-3.1.1/modules
make[5]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/modules/internet'
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/modules/internet'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/modules/internet'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/modules/lapack'
making Lapack.d from Lapack.c
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/modules/lapack'
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c Lapack.c -o Lapack.o
icc -std=gnu99 -shared -L/usr/local/lib -o lapack.so  Lapack.o     -lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lgfortran -lm -lquadmath
make[5]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/modules/lapack'
make[5]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/modules/lapack'
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/modules/lapack'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/modules/lapack'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/modules/vfonts'
making g_alab_her.d from g_alab_her.c
making g_cntrlify.d from g_cntrlify.c
making g_fontdb.d from g_fontdb.c
making g_her_glyph.d from g_her_glyph.c
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/modules/vfonts'
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c g_alab_her.c -o g_alab_her.o
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c g_cntrlify.c -o g_cntrlify.o
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c g_fontdb.c -o g_fontdb.o
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c g_her_glyph.c -o g_her_glyph.o
icc -std=gnu99 -shared -L/usr/local/lib -o vfonts.so g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o  -lm 
make[5]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/modules/vfonts'
make[5]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/modules/vfonts'
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/modules/vfonts'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/modules/vfonts'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/modules/X11'
making devX11.d from devX11.c
making rotated.d from rotated.c
making rbitmap.d from rbitmap.c
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/modules/X11'
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c devX11.c -o devX11.o
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rotated.c -o rotated.o
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rbitmap.c -o rbitmap.o
icc -std=gnu99 -shared -L/usr/local/lib -o R_X11.so devX11.o rotated.o rbitmap.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext   -lX11 -lXt  -ltiff -ljpeg -lpng -lz  -lm 
icc -std=gnu99 -I. -I../../../src/include -I../../../src/include  -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dataentry.c -o dataentry.o
icc -std=gnu99 -shared -L/usr/local/lib -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext   -lX11 -lXt   -lm 
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/modules/X11'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/modules/X11'
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/modules/X11'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/modules/X11'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/modules'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library'
mkdir -p -- ../../library
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/profile'
building system startup profile
mkdir -p -- ../../../library/base/R
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/profile'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/translations'
building package 'translations'
mkdir -p -- ../../../library/translations
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/translations'
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/translations'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/translations'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/base'
building package 'base'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/base'
mkdir -p -- ../../../library/base/demo
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/base'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/base'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/tools'
building package 'tools'
mkdir -p -- ../../../library/tools
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/tools'
mkdir -p -- ../../../library/tools/R
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/tools'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/tools'
make[5]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/tools/src'
making text.d from text.c
making init.d from init.c
making Rmd5.d from Rmd5.c
making md5.d from md5.c
making signals.d from signals.c
making install.d from install.c
making getfmts.d from getfmts.c
making http.d from http.c
making gramLatex.d from gramLatex.c
making gramRd.d from gramRd.c
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c text.c -o text.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c Rmd5.c -o Rmd5.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c md5.c -o md5.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c signals.c -o signals.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c install.c -o install.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c getfmts.c -o getfmts.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c http.c -o http.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c gramLatex.c -o gramLatex.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c gramRd.c -o gramRd.o
icc -std=gnu99 -shared -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o
make[6]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/tools/src'
mkdir -p -- ../../../../library/tools/libs
make[6]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/tools/src'
make[5]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/tools/src'
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/tools'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/tools'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/compiler'
building package 'compiler'
mkdir -p -- ../../../library/compiler
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/compiler'
mkdir -p -- ../../../library/compiler/R
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/compiler'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/compiler'
byte-compiling package 'compiler'
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/compiler'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/compiler'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/base'
byte-compiling package 'base'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/base'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/tools'
byte-compiling package 'tools'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/tools'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/utils'
building package 'utils'
mkdir -p -- ../../../library/utils
mkdir -p -- ../../../library/utils/doc
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/utils'
mkdir -p -- ../../../library/utils/R
mkdir -p -- ../../../library/utils/Sweave
mkdir -p -- ../../../library/utils/misc
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/utils'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/utils'
make[5]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/utils/src'
making init.d from init.c
making io.d from io.c
making size.d from size.c
making sock.d from sock.c
making stubs.d from stubs.c
making utils.d from utils.c
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c io.c -o io.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c size.c -o size.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c sock.c -o sock.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c stubs.c -o stubs.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c utils.c -o utils.o
icc -std=gnu99 -shared -L/usr/local/lib -o utils.so init.o io.o size.o sock.o stubs.o utils.o
make[6]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/utils/src'
mkdir -p -- ../../../../library/utils/libs
make[6]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/utils/src'
make[5]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/utils/src'
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/utils'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/utils'
byte-compiling package 'utils'
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/utils'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/utils'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices'
building package 'grDevices'
mkdir -p -- ../../../library/grDevices
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices'
mkdir -p -- ../../../library/grDevices/R
mkdir -p -- ../../../library/grDevices/afm
mkdir -p -- ../../../library/grDevices/enc
mkdir -p -- ../../../library/grDevices/icc
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices'
make[5]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices/src'
making axis_scales.d from axis_scales.c
making chull.d from chull.c
making devices.d from devices.c
making init.d from init.c
making stubs.d from stubs.c
making colors.d from colors.c
making devCairo.d from devCairo.c
making devPicTeX.d from devPicTeX.c
making devPS.d from devPS.c
making devQuartz.d from devQuartz.c
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c axis_scales.c -o axis_scales.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c chull.c -o chull.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c devices.c -o devices.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c stubs.c -o stubs.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c colors.c -o colors.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c devCairo.c -o devCairo.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c devPicTeX.c -o devPicTeX.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c devPS.c -o devPS.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/extra/zlib -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c devQuartz.c -o devQuartz.o
icc -std=gnu99 -shared -L/usr/local/lib -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o ../../../../src/extra/zlib/libz.a
make[6]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices/src'
mkdir -p -- ../../../../library/grDevices/libs
make[7]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices/src/cairo'
making cairoBM.d from cairoBM.c
make[8]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices/src/cairo'
make[9]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices/src/cairo'
icc -std=gnu99 -I. -I../../../../../src/include -I../../../../../src/include -pthread -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c cairoBM.c -o cairoBM.o
icc -std=gnu99 -shared -L/usr/local/lib -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo   -ltiff -ljpeg -lpng -lz  -lm 
make[9]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices/src/cairo'
make[8]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices/src/cairo'
make[7]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices/src/cairo'
make[6]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices/src'
make[5]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices/src'
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices'
byte-compiling package 'grDevices'
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/grDevices'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/graphics'
building package 'graphics'
mkdir -p -- ../../../library/graphics
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/graphics'
mkdir -p -- ../../../library/graphics/R
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/graphics'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/graphics'
make[5]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/graphics/src'
making init.d from init.c
making base.d from base.c
making graphics.d from graphics.c
making par.d from par.c
making plot.d from plot.c
making plot3d.d from plot3d.c
making stem.d from stem.c
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c base.c -o base.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c graphics.c -o graphics.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c par.c -o par.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c plot.c -o plot.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c plot3d.c -o plot3d.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c stem.c -o stem.o
icc -std=gnu99 -shared -L/usr/local/lib -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o
make[6]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/graphics/src'
mkdir -p -- ../../../../library/graphics/libs
make[6]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/graphics/src'
make[5]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/graphics/src'
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/graphics'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/graphics'
byte-compiling package 'graphics'
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/graphics'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/graphics'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/stats'
building package 'stats'
mkdir -p -- ../../../library/stats
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/stats'
mkdir -p -- ../../../library/stats/R
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/stats'
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/stats'
make[5]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/stats/src'
making init.d from init.c
making kmeans.d from kmeans.c
making ansari.d from ansari.c
making bandwidths.d from bandwidths.c
making chisqsim.d from chisqsim.c
making d2x2xk.d from d2x2xk.c
making fexact.d from fexact.c
making kendall.d from kendall.c
making ks.d from ks.c
making line.d from line.c
making smooth.d from smooth.c
making prho.d from prho.c
making swilk.d from swilk.c
making ksmooth.d from ksmooth.c
making loessc.d from loessc.c
making monoSpl.d from monoSpl.c
making isoreg.d from isoreg.c
making Srunmed.d from Srunmed.c
making dblcen.d from dblcen.c
making distance.d from distance.c
making hclust-utils.d from hclust-utils.c
making nls.d from nls.c
making rWishart.d from rWishart.c
making HoltWinters.d from HoltWinters.c
making PPsum.d from PPsum.c
making arima.d from arima.c
making burg.d from burg.c
making filter.d from filter.c
making mAR.d from mAR.c
making pacf.d from pacf.c
making starma.d from starma.c
making port.d from port.c
making family.d from family.c
making sbart.d from sbart.c
making approx.d from approx.c
making loglin.d from loglin.c
making lowess.d from lowess.c
making massdist.d from massdist.c
making splines.d from splines.c
making lm.d from lm.c
making complete_cases.d from complete_cases.c
making cov.d from cov.c
making deriv.d from deriv.c
making fft.d from fft.c
making fourier.d from fourier.c
making model.d from model.c
making optim.d from optim.c
making optimize.d from optimize.c
making integrate.d from integrate.c
making random.d from random.c
making distn.d from distn.c
making zeroin.d from zeroin.c
making rcont.d from rcont.c
making influence.d from influence.c
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c kmeans.c -o kmeans.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ansari.c -o ansari.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c bandwidths.c -o bandwidths.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c chisqsim.c -o chisqsim.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c d2x2xk.c -o d2x2xk.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c fexact.c -o fexact.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c kendall.c -o kendall.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ks.c -o ks.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c line.c -o line.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c smooth.c -o smooth.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c prho.c -o prho.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c swilk.c -o swilk.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ksmooth.c -o ksmooth.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c loessc.c -o loessc.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c monoSpl.c -o monoSpl.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c isoreg.c -o isoreg.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c Srunmed.c -o Srunmed.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dblcen.c -o dblcen.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c distance.c -o distance.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c hclust-utils.c -o hclust-utils.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c nls.c -o nls.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rWishart.c -o rWishart.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c HoltWinters.c -o HoltWinters.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c PPsum.c -o PPsum.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c arima.c -o arima.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c burg.c -o burg.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c filter.c -o filter.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c mAR.c -o mAR.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pacf.c -o pacf.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c starma.c -o starma.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c port.c -o port.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c family.c -o family.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c sbart.c -o sbart.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c approx.c -o approx.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c loglin.c -o loglin.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c lowess.c -o lowess.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c massdist.c -o massdist.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c splines.c -o splines.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c lm.c -o lm.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c complete_cases.c -o complete_cases.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c cov.c -o cov.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c deriv.c -o deriv.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c fft.c -o fft.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c fourier.c -o fourier.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c model.c -o model.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c optim.c -o optim.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c optimize.c -o optimize.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c integrate.c -o integrate.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c random.c -o random.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c distn.c -o distn.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c zeroin.c -o zeroin.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rcont.c -o rcont.o
icc -std=gnu99 -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c influence.c -o influence.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c bsplvd.f -o bsplvd.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c bvalue.f -o bvalue.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c bvalus.f -o bvalus.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c loessf.f -o loessf.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c ppr.f -o ppr.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c qsbart.f -o qsbart.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c sgram.f -o sgram.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c sinerp.f -o sinerp.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c sslvrg.f -o sslvrg.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c stxwx.f -o stxwx.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c hclust.f -o hclust.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c kmns.f -o kmns.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c eureka.f -o eureka.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c stl.f -o stl.o
gfortran -fpic  -g -O2 -ffloat-store -c portsrc.f -o portsrc.o
gfortran  -fvisibility=hidden -fpic  -g -O2  -c lminfl.f -o lminfl.o
icc -std=gnu99 -shared -L/usr/local/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lgfortran -lm -lquadmath
make[6]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/stats/src'
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building package 'datasets'
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building package 'methods'
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make[5]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/methods/src'
making do_substitute_direct.d from do_substitute_direct.c
making init.d from init.c
making methods_list_dispatch.d from methods_list_dispatch.c
making slot.d from slot.c
making class_support.d from class_support.c
making tests.d from tests.c
making utils.d from utils.c
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c do_substitute_direct.c -o do_substitute_direct.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c methods_list_dispatch.c -o methods_list_dispatch.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c slot.c -o slot.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c class_support.c -o class_support.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c tests.c -o tests.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c utils.c -o utils.o
icc -std=gnu99 -shared -L/usr/local/lib -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o
make[6]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/methods/src'
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building package 'grid'
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make[5]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/grid/src'
making gpar.d from gpar.c
making grid.d from grid.c
making just.d from just.c
making layout.d from layout.c
making matrix.d from matrix.c
making register.d from register.c
making state.d from state.c
making unit.d from unit.c
making util.d from util.c
making viewport.d from viewport.c
icc -std=gnu99 -I../../../../include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c gpar.c -o gpar.o
icc -std=gnu99 -I../../../../include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c grid.c -o grid.o
icc -std=gnu99 -I../../../../include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c just.c -o just.o
icc -std=gnu99 -I../../../../include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c layout.c -o layout.o
icc -std=gnu99 -I../../../../include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c matrix.c -o matrix.o
icc -std=gnu99 -I../../../../include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c register.c -o register.o
icc -std=gnu99 -I../../../../include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c state.c -o state.o
icc -std=gnu99 -I../../../../include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c unit.c -o unit.o
icc -std=gnu99 -I../../../../include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c util.c -o util.o
icc -std=gnu99 -I../../../../include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c viewport.c -o viewport.o
icc -std=gnu99 -shared -L/usr/local/lib -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o
make[6]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/grid/src'
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building package 'splines'
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making splines.d from splines.c
icc -std=gnu99 -I../../../../include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c splines.c -o splines.o
icc -std=gnu99 -shared -L/usr/local/lib -o splines.so splines.o
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building package 'stats4'
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building package 'tcltk'
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making init.d from init.c
making tcltk.d from tcltk.c
making tcltk_unix.d from tcltk_unix.c
icc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c tcltk.c -o tcltk.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I/usr/include/tcl8.5 -I/usr/include/tcl8.5  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c tcltk_unix.c -o tcltk_unix.o
icc -std=gnu99 -shared -L/usr/local/lib -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/x86_64-linux-gnu -ltcl8.5 -L/usr/lib/x86_64-linux-gnu -ltk8.5 -lX11 -lXss -lXext -lm
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building package 'parallel'
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making init.d from init.c
making rngstream.d from rngstream.c
making fork.d from fork.c
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rngstream.c -o rngstream.o
icc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c fork.c -o fork.o
icc -std=gnu99 -shared -L/usr/local/lib -o parallel.so init.o rngstream.o fork.o
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  base
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writing package indices
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make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library'
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library'
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library'
make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/Recommended'
make[2]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library/Recommended'
begin installing recommended package MASS
* installing *source* package ‘MASS’ ...
** package ‘MASS’ successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory `/tmp/Rtmpt5WNa2/R.INSTALL74da1345ce5f/MASS/src'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c MASS.c -o MASS.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c lqs.c -o lqs.o
icc -std=gnu99 -shared -L/usr/local/lib -o MASS.so MASS.o lqs.o
make[3]: Leaving directory `/tmp/Rtmpt5WNa2/R.INSTALL74da1345ce5f/MASS/src'
installing to /home/iwtcr/tmp/R-3.1.1/library/MASS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (MASS)
begin installing recommended package lattice
* installing *source* package ‘lattice’ ...
** package ‘lattice’ successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory `/tmp/Rtmphp4H1D/R.INSTALL753753b40b56/lattice/src'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c threeDplot.c -o threeDplot.o
icc -std=gnu99 -shared -L/usr/local/lib -o lattice.so init.o threeDplot.o
make[3]: Leaving directory `/tmp/Rtmphp4H1D/R.INSTALL753753b40b56/lattice/src'
installing to /home/iwtcr/tmp/R-3.1.1/library/lattice/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (lattice)
begin installing recommended package Matrix
* installing *source* package ‘Matrix’ ...
** package ‘Matrix’ successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c CHMfactor.c -o CHMfactor.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c Csparse.c -o Csparse.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c TMatrix_as.c -o TMatrix_as.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c Tsparse.c -o Tsparse.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c Mutils.c -o Mutils.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c chm_common.c -o chm_common.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c cs.c -o cs.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c cs_utils.c -o cs_utils.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dense.c -o dense.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dgCMatrix.c -o dgCMatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dgTMatrix.c -o dgTMatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dgeMatrix.c -o dgeMatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dpoMatrix.c -o dpoMatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dppMatrix.c -o dppMatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dsCMatrix.c -o dsCMatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dsyMatrix.c -o dsyMatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dspMatrix.c -o dspMatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dtCMatrix.c -o dtCMatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dtTMatrix.c -o dtTMatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dtrMatrix.c -o dtrMatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dtpMatrix.c -o dtpMatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c factorizations.c -o factorizations.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ldense.c -o ldense.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c lgCMatrix.c -o lgCMatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c sparseQR.c -o sparseQR.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c abIndex.c -o abIndex.o
make[4]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/CHOLMOD'
( cd Lib ; make clean )
make[5]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/CHOLMOD/Lib'
make[5]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/CHOLMOD/Lib'
make[4]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/CHOLMOD'
make[4]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/COLAMD'
( cd Source ; make clean )
make[5]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/COLAMD/Source'
make[5]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/COLAMD/Source'
make[4]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/COLAMD'
make[4]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/AMD'
( cd Source ; make clean )
make[5]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/AMD/Source'
make[5]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/AMD/Source'
make[4]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/AMD'
make[4]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/SuiteSparse_config'
make[4]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/SuiteSparse_config'
make[4]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/CHOLMOD'
( cd Lib ; make )
make[5]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/CHOLMOD/Lib'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_aat.c -o cholmod_aat.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_add.c -o cholmod_add.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_band.c -o cholmod_band.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_common.c -o cholmod_common.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_complex.c -o cholmod_complex.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_copy.c -o cholmod_copy.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_dense.c -o cholmod_dense.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_error.c -o cholmod_error.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_factor.c -o cholmod_factor.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_memory.c -o cholmod_memory.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_sparse.c -o cholmod_sparse.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_transpose.c -o cholmod_transpose.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_triplet.c -o cholmod_triplet.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Core/cholmod_version.c -o cholmod_version.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Check/cholmod_check.c -o cholmod_check.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Check/cholmod_read.c -o cholmod_read.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Check/cholmod_write.c -o cholmod_write.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Modify/cholmod_updown.c -o cholmod_updown.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_aat.c -o cholmod_l_aat.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_add.c -o cholmod_l_add.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_band.c -o cholmod_l_band.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_common.c -o cholmod_l_common.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_complex.c -o cholmod_l_complex.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_copy.c -o cholmod_l_copy.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_dense.c -o cholmod_l_dense.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_error.c -o cholmod_l_error.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_factor.c -o cholmod_l_factor.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_memory.c -o cholmod_l_memory.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_sparse.c -o cholmod_l_sparse.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_transpose.c -o cholmod_l_transpose.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_triplet.c -o cholmod_l_triplet.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Core/cholmod_version.c -o cholmod_l_version.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Check/cholmod_check.c -o cholmod_l_check.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Check/cholmod_read.c -o cholmod_l_read.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Check/cholmod_write.c -o cholmod_l_write.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Modify/cholmod_updown.c -o cholmod_l_updown.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -DDLONG -c  ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o
xiar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o  cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o 
xiar: executing 'ar'
make[5]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/CHOLMOD/Lib'
make[4]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/CHOLMOD'
make[4]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/COLAMD'
( cd Source ; make lib )
make[5]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/COLAMD/Source'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c colamd_global.c -o colamd_global.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c colamd.c -o colamd.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c colamd.c -o colamd_l.o
xiar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o
xiar: executing 'ar'
make[5]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/COLAMD/Source'
make[4]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/COLAMD'
make[4]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/AMD'
( cd Source ; make lib )
make[5]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/AMD/Source'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDINT -c amd_1.c -o amd_i_1.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c amd_1.c -o amd_l_1.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDINT -c amd_2.c -o amd_i_2.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c amd_2.c -o amd_l_2.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDINT -c amd_order.c -o amd_i_order.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c amd_order.c -o amd_l_order.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDINT -c amd_control.c -o amd_i_control.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c amd_control.c -o amd_l_control.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDINT -c amd_info.c -o amd_i_info.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c amd_info.c -o amd_l_info.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDINT -c amd_global.c -o amd_i_global.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -I../Include -DDLONG -c amd_global.c -o amd_l_global.o
xiar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o 
xiar: executing 'ar'
make[5]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/AMD/Source'
make[4]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/AMD'
make[4]: Entering directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/SuiteSparse_config'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -DNTIMER -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c SuiteSparse_config.c -o SuiteSparse_config.o
xiar -rucs ../SuiteSparse_config.a SuiteSparse_config.o
xiar: executing 'ar'
make[4]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src/SuiteSparse_config'
icc -std=gnu99 -shared -L/usr/local/lib -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lgfortran -lm -lquadmath
make[3]: Leaving directory `/tmp/RtmphsjUZF/R.INSTALL757411382ee0/Matrix/src'
installing to /home/iwtcr/tmp/R-3.1.1/library/Matrix/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘image’ from package ‘graphics’ in package ‘Matrix’
Creating a generic function for ‘solve’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘chol2inv’ from ‘base’ in package ‘Matrix’
    (from the saved implicit definition)
Creating a generic function for ‘chol2inv’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘determinant’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘update’ from package ‘stats’ in package ‘Matrix’
Creating a generic function for ‘as.vector’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘t’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘diag’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘as.matrix’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘as.array’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘head’ from package ‘utils’ in package ‘Matrix’
Creating a generic function for ‘tail’ from package ‘utils’ in package ‘Matrix’
Creating a generic function for ‘drop’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘mean’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘cov2cor’ from package ‘stats’ in package ‘Matrix’
Creating a generic function for ‘isSymmetric’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘unname’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘chol’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘norm’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘rcond’ from ‘base’ in package ‘Matrix’
    (from the saved implicit definition)
Creating a generic function for ‘rcond’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘all.equal’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘diff’ from package ‘base’ in package ‘Matrix’
in method for ‘coerce’ with signature ‘"matrix.csr","dgRMatrix"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"dgRMatrix","matrix.csr"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"matrix.csc","dgCMatrix"’: no definition for class “matrix.csc”
in method for ‘coerce’ with signature ‘"dgCMatrix","matrix.csc"’: no definition for class “matrix.csc”
in method for ‘coerce’ with signature ‘"matrix.coo","dgTMatrix"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"dgTMatrix","matrix.coo"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"dsparseMatrix","matrix.csr"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"matrix.csr","dgCMatrix"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"matrix.coo","dgCMatrix"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"matrix.csr","RsparseMatrix"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"matrix.csc","CsparseMatrix"’: no definition for class “matrix.csc”
in method for ‘coerce’ with signature ‘"matrix.coo","TsparseMatrix"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"matrix.csr","CsparseMatrix"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"matrix.coo","CsparseMatrix"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"matrix.csc","TsparseMatrix"’: no definition for class “matrix.csc”
in method for ‘coerce’ with signature ‘"matrix.csr","TsparseMatrix"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"CsparseMatrix","matrix.csr"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"CsparseMatrix","matrix.coo"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"CsparseMatrix","matrix.csc"’: no definition for class “matrix.csc”
in method for ‘coerce’ with signature ‘"matrix.csr","Matrix"’: no definition for class “matrix.csr”
in method for ‘coerce’ with signature ‘"matrix.coo","Matrix"’: no definition for class “matrix.coo”
in method for ‘coerce’ with signature ‘"matrix.csc","Matrix"’: no definition for class “matrix.csc”
Creating a generic function for ‘colSums’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘colMeans’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘rowMeans’ from package ‘base’ in package ‘Matrix’
in method for ‘colSums’ with signature ‘x="igCMatrix"’: no definition for class “igCMatrix”
in method for ‘rowSums’ with signature ‘x="igCMatrix"’: no definition for class “igCMatrix”
in method for ‘colMeans’ with signature ‘x="igCMatrix"’: no definition for class “igCMatrix”
in method for ‘rowMeans’ with signature ‘x="igCMatrix"’: no definition for class “igCMatrix”
Creating a generic function for ‘zapsmall’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘diag<-’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘crossprod’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘tcrossprod’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘print’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘summary’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘which’ from package ‘base’ in package ‘Matrix’
in method for ‘coerce’ with signature ‘"graphAM","sparseMatrix"’: no definition for class “graphAM”
in method for ‘coerce’ with signature ‘"graph","CsparseMatrix"’: no definition for class “graph”
in method for ‘coerce’ with signature ‘"graph","Matrix"’: no definition for class “graph”
in method for ‘coerce’ with signature ‘"graphNEL","CsparseMatrix"’: no definition for class “graphNEL”
in method for ‘coerce’ with signature ‘"graphNEL","TsparseMatrix"’: no definition for class “graphNEL”
in method for ‘coerce’ with signature ‘"sparseMatrix","graph"’: no definition for class “graph”
in method for ‘coerce’ with signature ‘"sparseMatrix","graphNEL"’: no definition for class “graphNEL”
in method for ‘coerce’ with signature ‘"TsparseMatrix","graphNEL"’: no definition for class “graphNEL”
Creating a generic function for ‘format’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.R’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.Q’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.qy’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.qty’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.coef’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.resid’ from package ‘base’ in package ‘Matrix’
Creating a generic function for ‘qr.fitted’ from package ‘base’ in package ‘Matrix’
** help
*** installing help indices
** building package indices
Loading required package: Matrix
** installing vignettes
   ‘Comparisons.Rnw’ 
   ‘Design-issues.Rnw’ 
   ‘Intro2Matrix.Rnw’ 
   ‘Introduction.Rnw’ 
   ‘sparseModels.Rnw’ 
** testing if installed package can be loaded
* DONE (Matrix)
begin installing recommended package nlme
* installing *source* package ‘nlme’ ...
** package ‘nlme’ successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory `/tmp/RtmpZ3QomF/R.INSTALL7bb02f19547a/nlme/src'
gfortran   -fpic  -g -O2  -c chol.f -o chol.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c corStruct.c -o corStruct.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c gnls.c -o gnls.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c matrix.c -o matrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c nlOptimizer.c -o nlOptimizer.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c nlme.c -o nlme.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c nlmefit.c -o nlmefit.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c nls.c -o nls.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pdMat.c -o pdMat.o
gfortran   -fpic  -g -O2  -c rs.f -o rs.o
icc -std=gnu99 -shared -L/usr/local/lib -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o nls.o pdMat.o rs.o -lgfortran -lm -lquadmath
make[3]: Leaving directory `/tmp/RtmpZ3QomF/R.INSTALL7bb02f19547a/nlme/src'
installing to /home/iwtcr/tmp/R-3.1.1/library/nlme/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (nlme)
begin installing recommended package survival
* installing *source* package ‘survival’ ...
** package ‘survival’ successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory `/tmp/Rtmp63hQZ2/R.INSTALL7c33a47ffc0/survival/src'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c agexact.c -o agexact.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c agfit4.c -o agfit4.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c agfit5.c -o agfit5.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c agmart.c -o agmart.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c agmart2.c -o agmart2.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c agscore.c -o agscore.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c agsurv3.c -o agsurv3.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c agsurv4.c -o agsurv4.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c agsurv5.c -o agsurv5.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c chinv2.c -o chinv2.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c chinv3.c -o chinv3.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c cholesky2.c -o cholesky2.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c cholesky3.c -o cholesky3.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c chsolve2.c -o chsolve2.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c chsolve3.c -o chsolve3.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c concordance1.c -o concordance1.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c cox_Rcallback.c -o cox_Rcallback.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c coxcount1.c -o coxcount1.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c coxdetail.c -o coxdetail.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c coxexact.c -o coxexact.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c coxfit5.c -o coxfit5.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c coxfit6.c -o coxfit6.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c coxmart.c -o coxmart.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c coxmart2.c -o coxmart2.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c coxph_wtest.c -o coxph_wtest.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c coxsafe.c -o coxsafe.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c coxscho.c -o coxscho.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c coxscore.c -o coxscore.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dmatrix.c -o dmatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c doloop.c -o doloop.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c msurv.c -o msurv.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pyears1.c -o pyears1.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pyears2.c -o pyears2.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pyears3b.c -o pyears3b.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pystep.c -o pystep.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c survConcordance.c -o survConcordance.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c survdiff2.c -o survdiff2.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c survfit4.c -o survfit4.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c survfitci.c -o survfitci.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c survpenal.c -o survpenal.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c survreg6.c -o survreg6.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c survreg7.c -o survreg7.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c survregc1.c -o survregc1.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c survregc2.c -o survregc2.o
icc -std=gnu99 -shared -L/usr/local/lib -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart2.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o concordance1.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o init.o msurv.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o
make[3]: Leaving directory `/tmp/Rtmp63hQZ2/R.INSTALL7c33a47ffc0/survival/src'
installing to /home/iwtcr/tmp/R-3.1.1/library/survival/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (survival)
begin installing recommended package boot
* installing *source* package ‘boot’ ...
** package ‘boot’ successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (boot)
begin installing recommended package cluster
* installing *source* package ‘cluster’ ...
** package ‘cluster’ successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory `/tmp/RtmpP3DfLd/R.INSTALL7e0e4ba793d6/cluster/src'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c clara.c -o clara.o
gfortran   -fpic  -g -O2  -c daisy.f -o daisy.o
gfortran   -fpic  -g -O2  -c dysta.f -o dysta.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c fanny.c -o fanny.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
gfortran   -fpic  -g -O2  -c mona.f -o mona.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pam.c -o pam.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c sildist.c -o sildist.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c spannel.c -o spannel.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c twins.c -o twins.o
icc -std=gnu99 -shared -L/usr/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -lquadmath
make[3]: Leaving directory `/tmp/RtmpP3DfLd/R.INSTALL7e0e4ba793d6/cluster/src'
installing to /home/iwtcr/tmp/R-3.1.1/library/cluster/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (cluster)
begin installing recommended package codetools
* installing *source* package ‘codetools’ ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (codetools)
begin installing recommended package foreign
* installing *source* package ‘foreign’ ...
** package ‘foreign’ successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory `/tmp/RtmpmA928A/R.INSTALL7e94143ac8b/foreign/src'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c R_systat.c -o R_systat.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c Rdbfread.c -o Rdbfread.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c Rdbfwrite.c -o Rdbfwrite.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c SASxport.c -o SASxport.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c avl.c -o avl.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c dbfopen.c -o dbfopen.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c file-handle.c -o file-handle.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c format.c -o format.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c minitab.c -o minitab.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pfm-read.c -o pfm-read.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c sfm-read.c -o sfm-read.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c spss.c -o spss.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c stataread.c -o stataread.o
icc -std=gnu99 -shared -L/usr/local/lib -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o
make[3]: Leaving directory `/tmp/RtmpmA928A/R.INSTALL7e94143ac8b/foreign/src'
installing to /home/iwtcr/tmp/R-3.1.1/library/foreign/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (foreign)
begin installing recommended package KernSmooth
* installing *source* package ‘KernSmooth’ ...
** package ‘KernSmooth’ successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory `/tmp/RtmpUBiBzw/R.INSTALL7f3e10d9d5d7/KernSmooth/src'
gfortran   -fpic  -g -O2  -c blkest.f -o blkest.o
gfortran   -fpic  -g -O2  -c cp.f -o cp.o
gfortran   -fpic  -g -O2  -c dgedi.f -o dgedi.o
gfortran   -fpic  -g -O2  -c dgefa.f -o dgefa.o
gfortran   -fpic  -g -O2  -c dgesl.f -o dgesl.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
gfortran   -fpic  -g -O2  -c linbin.f -o linbin.o
gfortran   -fpic  -g -O2  -c linbin2D.f -o linbin2D.o
gfortran   -fpic  -g -O2  -c locpoly.f -o locpoly.o
gfortran   -fpic  -g -O2  -c rlbin.f -o rlbin.o
gfortran   -fpic  -g -O2  -c sdiag.f -o sdiag.o
gfortran   -fpic  -g -O2  -c sstdiag.f -o sstdiag.o
icc -std=gnu99 -shared -L/usr/local/lib -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath
make[3]: Leaving directory `/tmp/RtmpUBiBzw/R.INSTALL7f3e10d9d5d7/KernSmooth/src'
installing to /home/iwtcr/tmp/R-3.1.1/library/KernSmooth/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KernSmooth)
begin installing recommended package rpart
* installing *source* package ‘rpart’ ...
** package ‘rpart’ successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory `/tmp/RtmpQs1oSx/R.INSTALL7f97442a2b78/rpart/src'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c anova.c -o anova.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c anovapred.c -o anovapred.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c branch.c -o branch.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c bsplit.c -o bsplit.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c choose_surg.c -o choose_surg.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c fix_cp.c -o fix_cp.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c free_tree.c -o free_tree.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c gini.c -o gini.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c graycode.c -o graycode.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c insert_split.c -o insert_split.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c make_cp_list.c -o make_cp_list.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c make_cp_table.c -o make_cp_table.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c mysort.c -o mysort.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c nodesplit.c -o nodesplit.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c partition.c -o partition.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c poisson.c -o poisson.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pred_rpart.c -o pred_rpart.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c print_tree.c -o print_tree.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rpart.c -o rpart.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rpart_callback.c -o rpart_callback.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rpartexp.c -o rpartexp.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rpartexp2.c -o rpartexp2.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rpcountup.c -o rpcountup.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rpmatrix.c -o rpmatrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rundown.c -o rundown.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c rundown2.c -o rundown2.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c surrogate.c -o surrogate.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c usersplit.c -o usersplit.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c xpred.c -o xpred.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c xval.c -o xval.o
icc -std=gnu99 -shared -L/usr/local/lib -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o
make[3]: Leaving directory `/tmp/RtmpQs1oSx/R.INSTALL7f97442a2b78/rpart/src'
installing to /home/iwtcr/tmp/R-3.1.1/library/rpart/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rpart)
begin installing recommended package class
* installing *source* package ‘class’ ...
** package ‘class’ successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory `/tmp/RtmpUujASj/R.INSTALL20c7f93a03e/class/src'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c class.c -o class.o
icc -std=gnu99 -shared -L/usr/local/lib -o class.so class.o
make[3]: Leaving directory `/tmp/RtmpUujASj/R.INSTALL20c7f93a03e/class/src'
installing to /home/iwtcr/tmp/R-3.1.1/library/class/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (class)
begin installing recommended package nnet
* installing *source* package ‘nnet’ ...
** package ‘nnet’ successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory `/tmp/RtmpKTQUpz/R.INSTALL23f5d2f9ac5/nnet/src'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c nnet.c -o nnet.o
icc -std=gnu99 -shared -L/usr/local/lib -o nnet.so nnet.o
make[3]: Leaving directory `/tmp/RtmpKTQUpz/R.INSTALL23f5d2f9ac5/nnet/src'
installing to /home/iwtcr/tmp/R-3.1.1/library/nnet/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (nnet)
begin installing recommended package spatial
* installing *source* package ‘spatial’ ...
** package ‘spatial’ successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory `/tmp/Rtmp2ppLQr/R.INSTALL2751097944f/spatial/src'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c krc.c -o krc.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c pps.c -o pps.o
icc -std=gnu99 -shared -L/usr/local/lib -o spatial.so init.o krc.o pps.o
make[3]: Leaving directory `/tmp/Rtmp2ppLQr/R.INSTALL2751097944f/spatial/src'
installing to /home/iwtcr/tmp/R-3.1.1/library/spatial/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (spatial)
begin installing recommended package mgcv
* installing *source* package ‘mgcv’ ...
** package ‘mgcv’ successfully unpacked and MD5 sums checked
** libs
make[3]: Entering directory `/tmp/RtmptAZzsv/R.INSTALL2b664be8a7/mgcv/src'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c coxph.c -o coxph.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c gdi.c -o gdi.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c init.c -o init.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c magic.c -o magic.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c mat.c -o mat.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c matrix.c -o matrix.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c mgcv.c -o mgcv.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c misc.c -o misc.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c mvn.c -o mvn.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c qp.c -o qp.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c soap.c -o soap.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c sparse-smooth.c -o sparse-smooth.o
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG  -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c tprs.c -o tprs.o
icc -std=gnu99 -shared -L/usr/local/lib -o mgcv.so coxph.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lgfortran -lm -lquadmath
make[3]: Leaving directory `/tmp/RtmptAZzsv/R.INSTALL2b664be8a7/mgcv/src'
installing to /home/iwtcr/tmp/R-3.1.1/library/mgcv/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (mgcv)
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/Recommended'
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library/Recommended'
make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/library'
building/updating vignettes for package 'grid' ...
building/updating vignettes for package 'parallel' ...
building/updating vignettes for package 'utils' ...
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/library'
make[1]: Entering directory `/home/iwtcr/tmp/R-3.1.1'
configuring Java ...
Java interpreter : /usr/bin/java
Java version     : 1.7.0_65
Java home path   : /usr/lib/jvm/java-7-openjdk-amd64/jre
Java compiler    : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar

trying to compile and link a JNI progam 
detected JNI cpp flags    : -I$(JAVA_HOME)/../include
detected JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
make[2]: Entering directory `/tmp/Rjavareconf.n8mSZ7'
icc -std=gnu99 -I/home/iwtcr/tmp/R-3.1.1/include -DNDEBUG -I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include -I/usr/local/include    -fpic  -O3 -ipo -openmp -xHost -multiple-processes  -c conftest.c -o conftest.o
icc -std=gnu99 -shared -L/usr/local/lib -o conftest.so conftest.o -L/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server -ljvm
make[2]: Leaving directory `/tmp/Rjavareconf.n8mSZ7'


JAVA_HOME        : /usr/lib/jvm/java-7-openjdk-amd64/jre
Java library path: $(JAVA_HOME)/lib/amd64/server
JNI cpp flags    : -I$(JAVA_HOME)/../include
JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
Updating Java configuration in /home/iwtcr/tmp/R-3.1.1
Done.

make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1'

 

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0 Kudos
1 Solution
Michael_L_2
Beginner
629 Views

I encounter the same issue.

I solved it by export MAIN_LDFLAGS='-openmp' which basically assign the necessary flag when you link the above library.

Hope it helps.

View solution in original post

12 Replies
Zhang_Z_Intel
Employee
629 Views

I find this solution is helpful: On the ./configure command line, switch the positions of --with-blas and --with-lapack. That is, you need to put --with-lapack after --with-blas.

Another thing that helped is to remove "ipo" from CFLAGS.

Pana_T_
Beginner
629 Views

After swapping the positions of --with-blas and --with-lapack:

ld: /tmp/ipo_iccJCYMjp.o: undefined reference to symbol '__kmpc_end@@VERSION'
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libiomp5.so: error adding symbols: DSO missing from command line
make[3]: *** [R.bin] Error 1
make[2]: ***  Error 2
make[1]: ***  Error 1
make: ***  Error 1

After removing -ipo from CFLAGS:

ld: Rmain.o: undefined reference to symbol '__kmpc_end@@VERSION'
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libiomp5.so: error adding symbols: DSO missing from command line
make[3]: *** [R.bin] Error 1
make[2]: ***  Error 2
make[1]: ***  Error 1
make: ***  Error 1

After removing -ipo from CXXFLAGS as well: same as above.

mecej4
Black Belt
629 Views

As it is the linker ld that issues the failure message, please post the linking command (if the build script directly calls ld, it will start with "ld", otherwise it will be a command starting with "ifort" and containing no arguments containing ".f" or ".f90"). I suspect that the linking command may contain object names after library names, which causes the linking error to occur.

Pana_T_
Beginner
629 Views

mecej4 wrote:
As it is the linker ld that issues the failure message, please post the linking command (if the build script directly calls ld, it will start with "ld", otherwise it will be a command starting with "ifort" and containing no arguments containing ".f" or ".f90"). I suspect that the linking command may contain object names after library names, which causes the linking error to occur.

There are no lines in the output (stdout or stderr) starting with ld or ifort. A few start with gfortran but they always contain arguments with ".f" extensions (the full output of ./configure and ./make is in my OP).

mecej4
Black Belt
629 Views

In that case, the build script probably uses icc to do the linking. However, the linking command line is not shown in the transcript. See if "make -n" will show you the command line. If the project contains multiple makefiles, you may need to be in the directory where the failed link command was issued.

Pana_T_
Beginner
629 Views

When it fails, I get the following:

gfortran  -fopenmp -fpic  -g -O2  -c xxxpr.f -o xxxpr.o
icc -std=gnu99 -shared  -L/usr/local/lib  -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o vfonts.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a ../extra/tre/libtre.a     -lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lgfortran -lm -lquadmath   -lreadline  -llzma -lrt -ldl -lm  
make[4]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/main'
/home/iwtcr/tmp/R-3.1.1/lib/libR.so is unchanged
make[4]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/main'
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/main'
make[3]: Entering directory `/home/iwtcr/tmp/R-3.1.1/src/main'
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c Rmain.c -o Rmain.o
icc -std=gnu99 -Wl,--export-dynamic   -L/usr/local/lib -o R.bin Rmain.o  -L../../lib -lR 
ld: /tmp/ipo_icclCdDTq.o: undefined reference to symbol '__kmpc_end@@VERSION'
/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libiomp5.so: error adding symbols: DSO missing from command line
make[3]: *** [R.bin] Error 1
make[3]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/main'
make[2]: ***  Error 2
make[2]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src/main'
make[1]: ***  Error 1
make[1]: Leaving directory `/home/iwtcr/tmp/R-3.1.1/src'
make: ***  Error 1

From lines 8-10 it indeed looks like the build script probably uses icc to do the linking.

The output of the command make -n in ./src/main, where the failure occurs:

echo "making CommandLineArgs.d from CommandLineArgs.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  CommandLineArgs.c > CommandLineArgs.d
echo "making Rdynload.d from Rdynload.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  Rdynload.c > Rdynload.d
echo "making Renviron.d from Renviron.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  Renviron.c > Renviron.d
echo "making RNG.d from RNG.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  RNG.c > RNG.d
echo "making agrep.d from agrep.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  agrep.c > agrep.d
echo "making apply.d from apply.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  apply.c > apply.d
echo "making arithmetic.d from arithmetic.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  arithmetic.c > arithmetic.d
echo "making array.d from array.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  array.c > array.d
echo "making attrib.d from attrib.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  attrib.c > attrib.d
echo "making bind.d from bind.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  bind.c > bind.d
echo "making builtin.d from builtin.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  builtin.c > builtin.d
echo "making character.d from character.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  character.c > character.d
echo "making coerce.d from coerce.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  coerce.c > coerce.d
echo "making colors.d from colors.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  colors.c > colors.d
echo "making complex.d from complex.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  complex.c > complex.d
echo "making connections.d from connections.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  connections.c > connections.d
echo "making context.d from context.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  context.c > context.d
echo "making cum.d from cum.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  cum.c > cum.d
echo "making dcf.d from dcf.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  dcf.c > dcf.d
echo "making datetime.d from datetime.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  datetime.c > datetime.d
echo "making debug.d from debug.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  debug.c > debug.d
echo "making deparse.d from deparse.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  deparse.c > deparse.d
echo "making devices.d from devices.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  devices.c > devices.d
echo "making dotcode.d from dotcode.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  dotcode.c > dotcode.d
echo "making dounzip.d from dounzip.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  dounzip.c > dounzip.d
echo "making dstruct.d from dstruct.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  dstruct.c > dstruct.d
echo "making duplicate.d from duplicate.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  duplicate.c > duplicate.d
echo "making edit.d from edit.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  edit.c > edit.d
echo "making engine.d from engine.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  engine.c > engine.d
echo "making envir.d from envir.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  envir.c > envir.d
echo "making errors.d from errors.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  errors.c > errors.d
echo "making eval.d from eval.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  eval.c > eval.d
echo "making format.d from format.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  format.c > format.d
echo "making gevents.d from gevents.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  gevents.c > gevents.d
echo "making gram.d from gram.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  gram.c > gram.d
echo "making gram-ex.d from gram-ex.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  gram-ex.c > gram-ex.d
echo "making graphics.d from graphics.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  graphics.c > graphics.d
echo "making grep.d from grep.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  grep.c > grep.d
echo "making identical.d from identical.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  identical.c > identical.d
echo "making inlined.d from inlined.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  inlined.c > inlined.d
echo "making inspect.d from inspect.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  inspect.c > inspect.d
echo "making internet.d from internet.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  internet.c > internet.d
echo "making iosupport.d from iosupport.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  iosupport.c > iosupport.d
echo "making lapack.d from lapack.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  lapack.c > lapack.d
echo "making list.d from list.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  list.c > list.d
echo "making localecharset.d from localecharset.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  localecharset.c > localecharset.d
echo "making logic.d from logic.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  logic.c > logic.d
echo "making main.d from main.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  main.c > main.d
echo "making mapply.d from mapply.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  mapply.c > mapply.d
echo "making match.d from match.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  match.c > match.d
echo "making memory.d from memory.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  memory.c > memory.d
echo "making names.d from names.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  names.c > names.d
echo "making objects.d from objects.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  objects.c > objects.d
echo "making options.d from options.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  options.c > options.d
echo "making paste.d from paste.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  paste.c > paste.d
echo "making platform.d from platform.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  platform.c > platform.d
echo "making plot.d from plot.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  plot.c > plot.d
echo "making plot3d.d from plot3d.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  plot3d.c > plot3d.d
echo "making plotmath.d from plotmath.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  plotmath.c > plotmath.d
echo "making print.d from print.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  print.c > print.d
echo "making printarray.d from printarray.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  printarray.c > printarray.d
echo "making printvector.d from printvector.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  printvector.c > printvector.d
echo "making printutils.d from printutils.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  printutils.c > printutils.d
echo "making qsort.d from qsort.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  qsort.c > qsort.d
echo "making random.d from random.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  random.c > random.d
echo "making raw.d from raw.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  raw.c > raw.d
echo "making registration.d from registration.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  registration.c > registration.d
echo "making relop.d from relop.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  relop.c > relop.d
echo "making rlocale.d from rlocale.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  rlocale.c > rlocale.d
echo "making saveload.d from saveload.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  saveload.c > saveload.d
echo "making scan.d from scan.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  scan.c > scan.d
echo "making seq.d from seq.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  seq.c > seq.d
echo "making serialize.d from serialize.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  serialize.c > serialize.d
echo "making sort.d from sort.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  sort.c > sort.d
echo "making source.d from source.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  source.c > source.d
echo "making split.d from split.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  split.c > split.d
echo "making sprintf.d from sprintf.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  sprintf.c > sprintf.d
echo "making startup.d from startup.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  startup.c > startup.d
echo "making subassign.d from subassign.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  subassign.c > subassign.d
echo "making subscript.d from subscript.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  subscript.c > subscript.d
echo "making subset.d from subset.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  subset.c > subset.d
echo "making summary.d from summary.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  summary.c > summary.d
echo "making sysutils.d from sysutils.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  sysutils.c > sysutils.d
echo "making times.d from times.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  times.c > times.d
echo "making unique.d from unique.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  unique.c > unique.d
echo "making util.d from util.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  util.c > util.d
echo "making version.d from version.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  version.c > version.d
echo "making vfonts.d from vfonts.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  vfonts.c > vfonts.d
echo "making Rmain.d from Rmain.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  Rmain.c > Rmain.d
echo "making alloca.d from alloca.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  alloca.c > alloca.d
echo "making mkdtemp.d from mkdtemp.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  mkdtemp.c > mkdtemp.d
echo "making strdup.d from strdup.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  strdup.c > strdup.d
echo "making strncasecmp.d from strncasecmp.c"
icc -std=gnu99 -MM -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H  strncasecmp.c > strncasecmp.d
cat CommandLineArgs.d Rdynload.d Renviron.d RNG.d agrep.d apply.d arithmetic.d array.d attrib.d bind.d builtin.d character.d coerce.d colors.d complex.d connections.d context.d cum.d dcf.d datetime.d debug.d deparse.d devices.d dotcode.d dounzip.d dstruct.d duplicate.d edit.d engine.d envir.d errors.d eval.d format.d gevents.d gram.d gram-ex.d graphics.d grep.d identical.d inlined.d inspect.d internet.d iosupport.d lapack.d list.d localecharset.d logic.d main.d mapply.d match.d memory.d names.d objects.d options.d paste.d platform.d plot.d plot3d.d plotmath.d print.d printarray.d printvector.d printutils.d qsort.d random.d raw.d registration.d relop.d rlocale.d saveload.d scan.d seq.d serialize.d sort.d source.d split.d sprintf.d startup.d subassign.d subscript.d subset.d summary.d sysutils.d times.d unique.d util.d version.d vfonts.d Rmain.d alloca.d mkdtemp.d strdup.d strncasecmp.d >> Makefile
touch Makedeps
make install-lib-local
make[1]: Entering directory `/home/joaomgb/tmp/R-3.1.1/src/main'
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c CommandLineArgs.c -o CommandLineArgs.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c Rdynload.c -o Rdynload.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c Renviron.c -o Renviron.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c RNG.c -o RNG.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c agrep.c -o agrep.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c apply.c -o apply.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c arithmetic.c -o arithmetic.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c array.c -o array.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c attrib.c -o attrib.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c bind.c -o bind.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c builtin.c -o builtin.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c character.c -o character.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c coerce.c -o coerce.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c colors.c -o colors.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c complex.c -o complex.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c connections.c -o connections.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c context.c -o context.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c cum.c -o cum.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dcf.c -o dcf.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c datetime.c -o datetime.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c debug.c -o debug.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c deparse.c -o deparse.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c devices.c -o devices.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dotcode.c -o dotcode.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dounzip.c -o dounzip.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dstruct.c -o dstruct.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c duplicate.c -o duplicate.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c edit.c -o edit.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c engine.c -o engine.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c envir.c -o envir.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c errors.c -o errors.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c eval.c -o eval.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c format.c -o format.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c gevents.c -o gevents.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c gram.c -o gram.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c gram-ex.c -o gram-ex.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c graphics.c -o graphics.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c grep.c -o grep.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c identical.c -o identical.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c inlined.c -o inlined.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c inspect.c -o inspect.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c internet.c -o internet.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c iosupport.c -o iosupport.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c lapack.c -o lapack.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c list.c -o list.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c localecharset.c -o localecharset.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c logic.c -o logic.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c main.c -o main.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c mapply.c -o mapply.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c match.c -o match.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c memory.c -o memory.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c names.c -o names.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c objects.c -o objects.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c options.c -o options.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c paste.c -o paste.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c platform.c -o platform.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c plot.c -o plot.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c plot3d.c -o plot3d.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c plotmath.c -o plotmath.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c print.c -o print.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c printarray.c -o printarray.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c printvector.c -o printvector.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c printutils.c -o printutils.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qsort.c -o qsort.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c random.c -o random.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c raw.c -o raw.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c registration.c -o registration.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c relop.c -o relop.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rlocale.c -o rlocale.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c saveload.c -o saveload.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c scan.c -o scan.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c seq.c -o seq.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c serialize.c -o serialize.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c sort.c -o sort.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c source.c -o source.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c split.c -o split.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c sprintf.c -o sprintf.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c startup.c -o startup.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c subassign.c -o subassign.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c subscript.c -o subscript.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c subset.c -o subset.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c summary.c -o summary.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c sysutils.c -o sysutils.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c times.c -o times.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c unique.c -o unique.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c util.c -o util.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c version.c -o version.o
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c vfonts.c -o vfonts.o
gfortran  -fopenmp -fpic  -g -O2  -c xxxpr.f -o xxxpr.o
(cd ../unix; make libunix.a)
make[2]: Entering directory `/home/joaomgb/tmp/R-3.1.1/src/unix'
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c Rembedded.c -o Rembedded.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dynload.c -o dynload.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c system.c -o system.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c sys-unix.c -o sys-unix.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c sys-std.c -o sys-std.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c X11.c -o X11.o
rm -rf libunix.a
xiar cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
x86_64-linux-gnu-ranlib libunix.a
make[2]: Leaving directory `/home/joaomgb/tmp/R-3.1.1/src/unix'
(cd ../nmath; make libnmath.a)
make[2]: Entering directory `/home/joaomgb/tmp/R-3.1.1/src/nmath'
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c mlutils.c -o mlutils.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c d1mach.c -o d1mach.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c i1mach.c -o i1mach.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c fmax2.c -o fmax2.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c fmin2.c -o fmin2.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c fprec.c -o fprec.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c fround.c -o fround.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c ftrunc.c -o ftrunc.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c sign.c -o sign.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c fsign.c -o fsign.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c imax2.c -o imax2.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c imin2.c -o imin2.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c chebyshev.c -o chebyshev.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c log1p.c -o log1p.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c expm1.c -o expm1.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c lgammacor.c -o lgammacor.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c gammalims.c -o gammalims.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c stirlerr.c -o stirlerr.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c bd0.c -o bd0.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c gamma.c -o gamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c lgamma.c -o lgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c gamma_cody.c -o gamma_cody.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c beta.c -o beta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c lbeta.c -o lbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c polygamma.c -o polygamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c cospi.c -o cospi.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c bessel_i.c -o bessel_i.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c bessel_j.c -o bessel_j.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c bessel_k.c -o bessel_k.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c bessel_y.c -o bessel_y.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c choose.c -o choose.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c snorm.c -o snorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c sexp.c -o sexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dgamma.c -o dgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pgamma.c -o pgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qgamma.c -o qgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rgamma.c -o rgamma.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dbeta.c -o dbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pbeta.c -o pbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qbeta.c -o qbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rbeta.c -o rbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dunif.c -o dunif.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c punif.c -o punif.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qunif.c -o qunif.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c runif.c -o runif.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dnorm.c -o dnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pnorm.c -o pnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qnorm.c -o qnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rnorm.c -o rnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dlnorm.c -o dlnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c plnorm.c -o plnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qlnorm.c -o qlnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rlnorm.c -o rlnorm.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c df.c -o df.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pf.c -o pf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qf.c -o qf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rf.c -o rf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dnf.c -o dnf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dt.c -o dt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pt.c -o pt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qt.c -o qt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rt.c -o rt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dnt.c -o dnt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dchisq.c -o dchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pchisq.c -o pchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qchisq.c -o qchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rchisq.c -o rchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rnchisq.c -o rnchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dbinom.c -o dbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pbinom.c -o pbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qbinom.c -o qbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rbinom.c -o rbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rmultinom.c -o rmultinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dcauchy.c -o dcauchy.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pcauchy.c -o pcauchy.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qcauchy.c -o qcauchy.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rcauchy.c -o rcauchy.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dexp.c -o dexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pexp.c -o pexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qexp.c -o qexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rexp.c -o rexp.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dgeom.c -o dgeom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pgeom.c -o pgeom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qgeom.c -o qgeom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rgeom.c -o rgeom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dhyper.c -o dhyper.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c phyper.c -o phyper.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qhyper.c -o qhyper.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rhyper.c -o rhyper.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dnbinom.c -o dnbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pnbinom.c -o pnbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qnbinom.c -o qnbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rnbinom.c -o rnbinom.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dpois.c -o dpois.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c ppois.c -o ppois.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qpois.c -o qpois.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rpois.c -o rpois.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dweibull.c -o dweibull.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pweibull.c -o pweibull.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qweibull.c -o qweibull.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rweibull.c -o rweibull.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dlogis.c -o dlogis.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c plogis.c -o plogis.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qlogis.c -o qlogis.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c rlogis.c -o rlogis.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dnchisq.c -o dnchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pnchisq.c -o pnchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qnchisq.c -o qnchisq.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c dnbeta.c -o dnbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pnbeta.c -o pnbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qnbeta.c -o qnbeta.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pnf.c -o pnf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c pnt.c -o pnt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qnf.c -o qnf.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qnt.c -o qnt.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c ptukey.c -o ptukey.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c qtukey.c -o qtukey.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c toms708.c -o toms708.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c wilcox.c -o wilcox.o
icc -std=gnu99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c signrank.c -o signrank.o
rm -rf libnmath.a
xiar cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
x86_64-linux-gnu-ranlib libnmath.a
make[2]: Leaving directory `/home/joaomgb/tmp/R-3.1.1/src/nmath'
icc -std=gnu99 -shared  -L/usr/local/lib  -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o vfonts.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a ../extra/tre/libtre.a     -lmkl_gf_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lgfortran -lm -lquadmath   -lreadline  -llzma -lrt -ldl -lm  
make rhome="/home/joaomgb/tmp/R-3.1.1" install-lib
make[2]: Entering directory `/home/joaomgb/tmp/R-3.1.1/src/main'
/bin/bash ../../src/scripts/mkinstalldirs.in "/home/joaomgb/tmp/R-3.1.1/bin/exec"
/bin/bash ../../src/scripts/mkinstalldirs.in "/home/joaomgb/tmp/R-3.1.1/lib"
/bin/bash ../../tools/copy-if-change libR.so "/home/joaomgb/tmp/R-3.1.1/lib/libR.so"
make[2]: Leaving directory `/home/joaomgb/tmp/R-3.1.1/src/main'
make[1]: Leaving directory `/home/joaomgb/tmp/R-3.1.1/src/main'
make install-bin-local
make[1]: Entering directory `/home/joaomgb/tmp/R-3.1.1/src/main'
icc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I../../src/extra   -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H    -fpic  -O3 -openmp -ipo -xHost -multiple-processes  -c Rmain.c -o Rmain.o
icc -std=gnu99 -Wl,--export-dynamic   -L/usr/local/lib -o R.bin Rmain.o  -L../../lib -lR 
make rhome="/home/joaomgb/tmp/R-3.1.1" install-bin
make[2]: Entering directory `/home/joaomgb/tmp/R-3.1.1/src/main'
/bin/bash ../../src/scripts/mkinstalldirs.in "/home/joaomgb/tmp/R-3.1.1/bin/exec"
/bin/bash ../../tools/copy-if-change R.bin "/home/joaomgb/tmp/R-3.1.1/bin/exec/R"
make[2]: Leaving directory `/home/joaomgb/tmp/R-3.1.1/src/main'
make[1]: Leaving directory `/home/joaomgb/tmp/R-3.1.1/src/main'

 

mecej4
Black Belt
629 Views

I certainly have not read through all the lines of the transcript (!?), but is looks to me that at least the linking command (using icc) on Line-9 is missing the -openmp option.

TimP
Black Belt
629 Views

icc link option -openmp is just a simplification of -liomp5 -lpthread so I don't see this as accounting for the problem, when there aren't any messages associated with such a problem.

I'd be concerned about:

icc -ipo option when linking with collections of .o files made by gfortran

What does icc do with -std=gnu99?

General lack of development testing of icc with gfortran and mkl gfortran libraries.

Mkl gfortran library may not be tested well with libiomp5, although in principle it may work.

QIAOMIN_Q_
New Contributor I
629 Views

From the error message

"ld: /tmp/ipo_iccUpPSPh.o: undefined reference to symbol '__kmpc_end@@VERSION'

/opt/intel/composer_xe_2013_sp1.3.174/compiler/lib/intel64/libiomp5.so: error adding symbols: DSO missing from command line

"

It means before generating the R binary file the linker needs to find related openmp library which contains the symbol '__kmpc_end@@VERSION', and in this case seems linker did not find the the symbol '__kmpc_end@@VERSION' in the libiomp5.so.

Which is your gcc version?

 

Thank you.
--
QIAOMINQ.
Intel Developer Support

Pana_T_
Beginner
629 Views

QIAOMIN Q. (Intel) wrote:
Which is your gcc version?

$ gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) 
$ gfortran -v
Using built-in specs.
COLLECT_GCC=gfortran
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.8/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 4.8.2-19ubuntu1' --with-bugurl=file:///usr/share/doc/gcc-4.8/README.Bugs --enable-languages=c,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.8 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.8 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --disable-libmudflap --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-4.8-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-4.8-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.8.2 (Ubuntu 4.8.2-19ubuntu1) 
$ icc -v
icc version 14.0.3 (gcc version 4.8.0 compatibility)

Besides,

$ uname -ra
Linux ecphq 3.13.0-30-generic #54-Ubuntu SMP Mon Jun 9 22:45:01 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux

 

Michael_L_2
Beginner
630 Views

I encounter the same issue.

I solved it by export MAIN_LDFLAGS='-openmp' which basically assign the necessary flag when you link the above library.

Hope it helps.

View solution in original post

Pana_T_
Beginner
629 Views

Michael L. wrote:

I encounter the same issue.

I solved it by export MAIN_LDFLAGS='-openmp' which basically assign the necessary flag when you link the above library.

Hope it helps.

This solution worked for me. Thanks!

Reply