Judging by the line ">>> cannot open file hpccinf.txt <<<" I guess that you did not provide an input file to the benchmark. Please note that the example file has an underscore in its name - "_hpccinf.txt". Feel free to rename it and modify per your needs.
Another thing that I have noticed is that in the list of libraries the FFTW wrapper libraries must go first: LAlib = -Wl,--start-group $(LAdir)/libfftw2x_cdft_DOUBLE_ilp64.a $(LAdir)/libfftw2xc_intel.a $(LAdir)/libmkl_intel_lp64.a
/opt/intel/lib/intel64/libiomp5.a -lpthread -lm