I get this error when training a neural net using using Theano and Lasagne.
In particular, I get this error when taking the square or square root of a variable e.g., theano.tensor.sqr(input)
In case it helps:
I've installed python packages: mkl 2018.0.3, mkl-service 1.1.2, mkl_fft 1.0.4, mkl_random 1.0.1
Please ask in the Intel Distribution for Python Forum, https://software.intel.com/en-us/forums/intel-distribution-for-python .
If you can record and report on the arguments passed to DGELSD, you can post the details and ask for help here.
How about change the input a little manually and see if any change.
Here is some information for your reference