I installed the current compilers/mkl lib on a centos.
The version of the compiler is : compiler/2021.1.2
The version of the mkl version is : mkl/2021.1.1
When i'm trying to load the mkl, i've got the error :
lio5-devel% module load mkl/latest
Loading mkl version 2021.1.1
ERROR: Unable to locate a modulefile for 'compiler-rt/2021.1.1'
So i installed compiler-rt/2021.1.1 with the package :
intel-oneapi-compiler-dpcpp-cpp-runtime-2021.1.1
Therefore, i can now load the mkl, but then i cannot load the lastest compiler !
lio5-devel% module load compiler/2021.1.2
Loading compiler version 2021.1.2
WARNING: tbb/latest cannot be loaded due to a conflict.
HINT: Might try "module unload tbb" first.
The problem is that the compiler-rt version is older than the lastest compiler, but is needed for the mkl modulefiles.
What is the good way to load the intel mkl with the lastest compiler ?
Thanks in advance,
Yann
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Hi Yann,
The latest version of the DPC++ compiler runtime 2021.1.2 seems to be available via APT. I have installed it on ubuntu 18.04. However, I do not have the CentOS environment to try out.
Could you please try out the steps below:
- Firstly, setup the oneAPI repository, as given in the link below:
- If you have already set the repository, make sure that you update all the packages.
- To list all the oneAPI packages, use this command:
# YUM:
sudo -E yum --disablerepo="*" --enablerepo="oneAPI" list available
# DNF:
sudo -E dnf --disablerepo="*" --enablerepo="oneAPI" list available
Search for "intel-oneapi-compiler-dpcpp-cpp-runtime-2021.1.2" and if you find it, you may either install/upgrade this package.
Let me know in case you don't see the latest version.
Thanks,
Rahul
Hi Rahul,
Thanks for taking the time to help me.
I think it's great that oneAPI includes scripts for modules. It's so useful. But it looks like it's broken for the mkl lib.
I've got all the rpm already updated
# yum --disablerepo="*" --enablerepo="oneAPI" update
Modules complémentaires chargés : copr, fastestmirror, langpacks, nvidia
Loading mirror speeds from cached hostfile
No packages marked for update
Here are the available modules :
--------------------------------------------------- /opt/intel/oneapi/modulefiles ----------------------------------------------------
advisor/2021.1.1 compiler-rt32/latest dev-utilities/2021.1.1 dpct/latest itac/2021.1.1 tbb/latest
advisor/latest compiler/2021.1.1 dev-utilities/latest dpl/2021.1.2 itac/latest vpl/2021.1.1
ccl/2021.1.1 compiler/2021.1.2 dnnl-cpu-gomp/2021.1.1 dpl/latest mkl/2021.1.1 vpl/latest
ccl/latest compiler/latest dnnl-cpu-gomp/latest init_opencl/2021.1.2 mkl/latest vtune/2021.1.2
clck/2021.1.1 compiler32/2021.1.1 dnnl-cpu-iomp/2021.1.1 init_opencl/latest mkl32/2021.1.1 vtune/latest
clck/latest compiler32/2021.1.2 dnnl-cpu-iomp/latest inspector/2021.1.1 mkl32/latest
compiler-rt/2021.1.1 compiler32/latest dnnl-cpu-tbb/2021.1.1 inspector/latest mpi/2021.1.1
compiler-rt/2021.1.2 dal/2021.1.1 dnnl-cpu-tbb/latest intel_ipp_intel64/2021.1.1 mpi/latest
compiler-rt/latest dal/latest dnnl/2021.1.1 intel_ipp_intel64/latest oclfpga/2021.1.2
compiler-rt32/2021.1.1 debugger/10.0.0 dnnl/latest intel_ippcp_intel64/2021.1.1 oclfpga/latest
compiler-rt32/2021.1.2 debugger/latest dpct/2021.1.1 intel_ippcp_intel64/latest tbb/2021.1.1
When i'm trying to load the latest compiler (2021.1.2) with the latest mkl (2021.1.1) i've got the error :
jobic@lio5:~$ module load compiler/latest mkl/latest
Loading compiler version 2021.1.2
Loading tbb version 2021.1.1
Loading debugger version 10.0.0
Loading compiler-rt version 2021.1.2
Loading dpl version 2021.1.2
Loading oclfpga version 2021.1.2
Loading mkl version 2021.1.1
WARNING: compiler-rt/2021.1.1 cannot be loaded due to a conflict.
HINT: Might try "module unload compiler-rt" first.
That's because in the module script, it's trying to load compiler-rt/2021.1.1 by default, which conflicts with my latest rt version.
I can still use everything by loading directly the bash environment scripts :
source /opt/intel/oneapi/compiler/2021.1.2/env/vars.sh
source /opt/intel/oneapi/mkl/2021.1.1/env/vars.sh
But i wanted it to work with modules.
Do you see where the problem is ?
Thanks,
Yann
Hi again,
I tried to desintall/reinstall everything
# yum --disablerepo="*" --enablerepo="oneAPI" remove '*oneapi*'
# yum --disablerepo="*" --enablerepo="oneAPI" install intel-basekit intel-hpckit
I then run the script
# ./modulefiles-setup.sh
I loaded everything to check :
# . setvars.sh
:: initializing oneAPI environment ...
BASH version = 4.2.46(2)-release
:: debugger -- latest
:: vpl -- latest
:: mpi -- latest
:: mkl -- latest
:: itac -- latest
:: intelpython -- latest
:: dpcpp-ct -- latest
:: clck -- latest
:: dev-utilities -- latest
:: tbb -- latest
:: advisor -- latest
:: dpl -- latest
:: vtune -- latest
:: dal -- latest
:: ippcp -- latest
:: compiler -- latest
:: ccl -- latest
:: inspector -- latest
:: dnnl -- latest
:: ipp -- latest
:: oneAPI environment initialized ::
# icc -V
Intel(R) C Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.1.2 Build 20201208_000000
Copyright (C) 1985-2020 Intel Corporation. All rights reserved.
I then have the following modules :
--------------------------------------------------- /opt/intel/oneapi/modulefiles ----------------------------------------------------
advisor/2021.1.1 compiler/latest dnnl-cpu-iomp/2021.1.1 init_opencl/latest mkl32/2021.1.1 vtune/latest
advisor/latest compiler32/2021.1.2 dnnl-cpu-iomp/latest inspector/2021.1.1 mkl32/latest
ccl/2021.1.1 compiler32/latest dnnl-cpu-tbb/2021.1.1 inspector/latest mpi/2021.1.1
ccl/latest dal/2021.1.1 dnnl-cpu-tbb/latest intel_ipp_intel64/2021.1.1 mpi/latest
clck/2021.1.1 dal/latest dnnl/2021.1.1 intel_ipp_intel64/latest oclfpga/2021.1.2
clck/latest debugger/10.0.0 dnnl/latest intel_ippcp_intel64/2021.1.1 oclfpga/latest
compiler-rt/2021.1.2 debugger/latest dpct/2021.1.1 intel_ippcp_intel64/latest tbb/2021.1.1
compiler-rt/latest dev-utilities/2021.1.1 dpct/latest itac/2021.1.1 tbb/latest
compiler-rt32/2021.1.2 dev-utilities/latest dpl/2021.1.2 itac/latest vpl/2021.1.1
compiler-rt32/latest dnnl-cpu-gomp/2021.1.1 dpl/latest mkl/2021.1.1 vpl/latest
compiler/2021.1.2 dnnl-cpu-gomp/latest init_opencl/2021.1.2 mkl/latest vtune/2021.1.2
I'm still having the same issue :
$ module load compiler/latest mkl/latest
Loading compiler version 2021.1.2
Loading tbb version 2021.1.1
Loading debugger version 10.0.0
Loading compiler-rt version 2021.1.2
Loading dpl version 2021.1.2
Loading oclfpga version 2021.1.2
Loading mkl version 2021.1.1
ERROR: Unable to locate a modulefile for 'compiler-rt/2021.1.1'
I should load the latest compiler-rt version, not the old one.
In the module script of oneapi/modulefiles/mkl/latest i've got :
# Load dependencies
module load compiler-rt/${modulefilever}
module load tbb/${modulefilever}
and i don't have compiler-rt/${modulefilever}, because the version of compiler/latest is 2012.1.2, therefore i have (see above) compiler-rt/2021.1.2, and not compiler-rt/2021.1.1, which is the version of the mkl.
Thanks again,
Yann
Hi,
Thanks for the heads up.
I reinstalled everything followed the documentation, and load modulefiles with :
# ./modulefiles-setup.sh
# module use modulefiles
When i'm trying to load, i've got the error :
# module load compiler mkl
Loading compiler version 2021.2.0
Loading tbb version 2021.2.0
Loading debugger version 10.1.1
cmdInfo.c(207):ERROR:11: Usage is 'module-infomode [load|remove|display|help|whatis|switch1|switch2|switch3|switch|nonpersist]'
debugger/latest(54):ERROR:102: Tcl command execution failed: if { [ module-info mode unload ] } {
puts stderr "Removing $modulefilename version $modulefilever"
}
Loading compiler-rt version 2021.2.0
compiler/latest(105):ERROR:102: Tcl command execution failed: if { [ is-avail dpl ] } {
module load dpl
}
Loading mkl version 2021.2.0
compiler-rt/2021.2.0(71):ERROR:150: Module 'compiler-rt/2021.2.0' conflicts with the currently loaded module(s) 'compiler-rt/latest'
compiler-rt/2021.2.0(71):ERROR:102: Tcl command execution failed: conflict $mname64
tbb/2021.2.0(73):ERROR:150: Module 'tbb/2021.2.0' conflicts with the currently loaded module(s) 'tbb/latest'
tbb/2021.2.0(73):ERROR:102: Tcl command execution failed: conflict $mname64
Regards,
Yann
Hi,
Sorry for the late answer.
I'm on
cat /etc/redhat-release
CentOS Linux release 7.6.1810 (Core)Regards,
Yann
Hi,
We currently do not support CentOS 7.x
Please visit the below link for the system requirements.
Regards
Rajesh.
Hi,
We are closing this thread for now as we don't support older CentOS. If you require any additional assistance from Intel, please start a new thread. Any further interaction in this thread will be considered community only.
Have a Good day.
Regards
Rajesh
I fixed ours by updating the module file for intel-oneAPI-toolkit/mkl/2023.1.0 and just put the correct module names that correspond to compiler-rt and tbb:
# Load required dependencies
if { ![ is-loaded tbb ] } { module load intel-tbb-oss/intel64/2020.3 }
if { ![ is-loaded compiler-rt ] } { module load intel-oneAPI-toolkit/compiler-rt/2023.1.0 }
