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mkl modulefiles loading error in OneApi toolkit

yannj
Beginner
1,366 Views

I installed the current compilers/mkl lib on a centos.

The version of the compiler is : compiler/2021.1.2

The version of the mkl version is : mkl/2021.1.1

When i'm trying to load the mkl, i've got the error :

lio5-devel% module load mkl/latest
Loading mkl version 2021.1.1
ERROR: Unable to locate a modulefile for 'compiler-rt/2021.1.1'

So i installed compiler-rt/2021.1.1 with the package :

intel-oneapi-compiler-dpcpp-cpp-runtime-2021.1.1

Therefore, i can now load the mkl, but then i cannot load the lastest compiler !

lio5-devel% module load compiler/2021.1.2
Loading compiler version 2021.1.2
WARNING: tbb/latest cannot be loaded due to a conflict.
HINT: Might try "module unload tbb" first.

 

The problem is that the compiler-rt version is older than the lastest compiler, but is needed for the mkl modulefiles.

What is the good way to load the intel mkl with the lastest compiler ?

Thanks in advance,

Yann

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13 Replies
RahulV_intel
Moderator
1,323 Views

Hi Yann,

 

The latest version of the DPC++ compiler runtime 2021.1.2 seems to be available via APT. I have installed it on ubuntu 18.04. However, I do not have the CentOS environment to try out.

 

Could you please try out the steps below:

  • Firstly, setup the oneAPI repository, as given in the link below:

https://software.intel.com/content/www/us/en/develop/articles/installing-intel-oneapi-toolkits-via-y...

 

  • If you have already set the repository, make sure that you update all the packages.

 

  • To list all the oneAPI packages, use this command:
# YUM:

sudo -E yum --disablerepo="*" --enablerepo="oneAPI" list available



# DNF:

sudo -E dnf --disablerepo="*" --enablerepo="oneAPI" list available

 

Search for "intel-oneapi-compiler-dpcpp-cpp-runtime-2021.1.2" and if you find it, you may either install/upgrade this package.

 

Let me know in case you don't see the latest version.

 

Thanks,

Rahul

yannj
Beginner
1,317 Views

Hi Rahul,

Thanks for taking the time to help me.

I think it's great that oneAPI includes scripts for modules. It's so useful. But it looks like it's broken for the mkl lib. 

I've got all the rpm already updated

# yum --disablerepo="*" --enablerepo="oneAPI" update
Modules complémentaires chargés : copr, fastestmirror, langpacks, nvidia
Loading mirror speeds from cached hostfile
No packages marked for update

Here are the available modules :

--------------------------------------------------- /opt/intel/oneapi/modulefiles ----------------------------------------------------
advisor/2021.1.1        compiler-rt32/latest  dev-utilities/2021.1.1  dpct/latest                   itac/2021.1.1     tbb/latest
advisor/latest          compiler/2021.1.1     dev-utilities/latest    dpl/2021.1.2                  itac/latest       vpl/2021.1.1
ccl/2021.1.1            compiler/2021.1.2     dnnl-cpu-gomp/2021.1.1  dpl/latest                    mkl/2021.1.1      vpl/latest
ccl/latest              compiler/latest       dnnl-cpu-gomp/latest    init_opencl/2021.1.2          mkl/latest        vtune/2021.1.2
clck/2021.1.1           compiler32/2021.1.1   dnnl-cpu-iomp/2021.1.1  init_opencl/latest            mkl32/2021.1.1    vtune/latest
clck/latest             compiler32/2021.1.2   dnnl-cpu-iomp/latest    inspector/2021.1.1            mkl32/latest
compiler-rt/2021.1.1    compiler32/latest     dnnl-cpu-tbb/2021.1.1   inspector/latest              mpi/2021.1.1
compiler-rt/2021.1.2    dal/2021.1.1          dnnl-cpu-tbb/latest     intel_ipp_intel64/2021.1.1    mpi/latest
compiler-rt/latest      dal/latest            dnnl/2021.1.1           intel_ipp_intel64/latest      oclfpga/2021.1.2
compiler-rt32/2021.1.1  debugger/10.0.0       dnnl/latest             intel_ippcp_intel64/2021.1.1  oclfpga/latest
compiler-rt32/2021.1.2  debugger/latest       dpct/2021.1.1           intel_ippcp_intel64/latest    tbb/2021.1.1

When i'm trying to load the latest compiler (2021.1.2) with the latest mkl (2021.1.1) i've got the error :

jobic@lio5:~$ module load compiler/latest mkl/latest
Loading compiler version 2021.1.2
Loading tbb version 2021.1.1
Loading debugger version 10.0.0
Loading compiler-rt version 2021.1.2
Loading dpl version 2021.1.2
Loading oclfpga version 2021.1.2
Loading mkl version 2021.1.1
WARNING: compiler-rt/2021.1.1 cannot be loaded due to a conflict.
HINT: Might try "module unload compiler-rt" first.

That's because in the module script, it's trying to load compiler-rt/2021.1.1 by default, which conflicts with my latest rt version.

I can still use everything by loading directly the bash environment scripts :

source /opt/intel/oneapi/compiler/2021.1.2/env/vars.sh
source /opt/intel/oneapi/mkl/2021.1.1/env/vars.sh

But i wanted it to work with modules.

Do you see where the problem is ?

Thanks,

Yann

yannj
Beginner
1,315 Views

Hi again,

I tried to desintall/reinstall everything

 

# yum --disablerepo="*" --enablerepo="oneAPI" remove '*oneapi*'
# yum --disablerepo="*" --enablerepo="oneAPI" install intel-basekit intel-hpckit

 

I then run the script 

 

# ./modulefiles-setup.sh

 

I loaded everything to check :

 

# . setvars.sh
:: initializing oneAPI environment ...
   BASH version = 4.2.46(2)-release
:: debugger -- latest
:: vpl -- latest
:: mpi -- latest
:: mkl -- latest
:: itac -- latest
:: intelpython -- latest
:: dpcpp-ct -- latest
:: clck -- latest
:: dev-utilities -- latest
:: tbb -- latest
:: advisor -- latest
:: dpl -- latest
:: vtune -- latest
:: dal -- latest
:: ippcp -- latest
:: compiler -- latest
:: ccl -- latest
:: inspector -- latest
:: dnnl -- latest
:: ipp -- latest
:: oneAPI environment initialized ::

# icc -V
Intel(R) C Intel(R) 64 Compiler Classic for applications running on Intel(R) 64, Version 2021.1.2 Build 20201208_000000
Copyright (C) 1985-2020 Intel Corporation.  All rights reserved.

 

I then have the following modules :

 

--------------------------------------------------- /opt/intel/oneapi/modulefiles ----------------------------------------------------
advisor/2021.1.1        compiler/latest         dnnl-cpu-iomp/2021.1.1  init_opencl/latest            mkl32/2021.1.1    vtune/latest
advisor/latest          compiler32/2021.1.2     dnnl-cpu-iomp/latest    inspector/2021.1.1            mkl32/latest
ccl/2021.1.1            compiler32/latest       dnnl-cpu-tbb/2021.1.1   inspector/latest              mpi/2021.1.1
ccl/latest              dal/2021.1.1            dnnl-cpu-tbb/latest     intel_ipp_intel64/2021.1.1    mpi/latest
clck/2021.1.1           dal/latest              dnnl/2021.1.1           intel_ipp_intel64/latest      oclfpga/2021.1.2
clck/latest             debugger/10.0.0         dnnl/latest             intel_ippcp_intel64/2021.1.1  oclfpga/latest
compiler-rt/2021.1.2    debugger/latest         dpct/2021.1.1           intel_ippcp_intel64/latest    tbb/2021.1.1
compiler-rt/latest      dev-utilities/2021.1.1  dpct/latest             itac/2021.1.1                 tbb/latest
compiler-rt32/2021.1.2  dev-utilities/latest    dpl/2021.1.2            itac/latest                   vpl/2021.1.1
compiler-rt32/latest    dnnl-cpu-gomp/2021.1.1  dpl/latest              mkl/2021.1.1                  vpl/latest
compiler/2021.1.2       dnnl-cpu-gomp/latest    init_opencl/2021.1.2    mkl/latest                    vtune/2021.1.2

 

I'm still having the same issue :

 

$ module load compiler/latest mkl/latest
Loading compiler version 2021.1.2
Loading tbb version 2021.1.1
Loading debugger version 10.0.0
Loading compiler-rt version 2021.1.2
Loading dpl version 2021.1.2
Loading oclfpga version 2021.1.2
Loading mkl version 2021.1.1
ERROR: Unable to locate a modulefile for 'compiler-rt/2021.1.1'

 

I should load the latest compiler-rt version, not the old one.

In the module script of oneapi/modulefiles/mkl/latest i've got :

 

# Load dependencies
module load compiler-rt/${modulefilever}
module load tbb/${modulefilever}

 

and i don't have compiler-rt/${modulefilever}, because the version of compiler/latest is 2012.1.2, therefore i have (see above) compiler-rt/2021.1.2, and not compiler-rt/2021.1.1, which is the version of the mkl.

Thanks again,

Yann

RahulV_intel
Moderator
1,292 Views

Hi,


Thanks for reporting your issue. We are working on it and will get back to you.


Thanks,

Rahul


Khang_N_Intel
Employee
1,264 Views

Hi Yann,

 

I will take a look at this issue and will let you know what to do next.

Also, I went forum thread and it seems like it is closed.

 

Khang


Khang_N_Intel
Employee
1,059 Views

Hi Yann,

Are you still having problem with loading the modules?

Have you tried the latest version of oneAPI, 2021.2?

Are you using the latest version of CentOS (8.x)?


MRajesh_intel
Moderator
964 Views

Hi,


Can you please update us on whether your issue has been resolved or not?


Regards

Rajesh.


yannj
Beginner
959 Views

Hi,

Thanks for the heads up.

I reinstalled everything followed the documentation, and load modulefiles with :

# ./modulefiles-setup.sh
# module use modulefiles

 

When i'm trying to load, i've got the error :

# module load compiler mkl
Loading compiler version 2021.2.0
Loading tbb version 2021.2.0
Loading debugger version 10.1.1
cmdInfo.c(207):ERROR:11: Usage is 'module-infomode [load|remove|display|help|whatis|switch1|switch2|switch3|switch|nonpersist]'
debugger/latest(54):ERROR:102: Tcl command execution failed: if { [ module-info mode unload ] } {
puts stderr "Removing $modulefilename version $modulefilever"
}

Loading compiler-rt version 2021.2.0
compiler/latest(105):ERROR:102: Tcl command execution failed: if { [ is-avail dpl ] } {
module load dpl
}

Loading mkl version 2021.2.0
compiler-rt/2021.2.0(71):ERROR:150: Module 'compiler-rt/2021.2.0' conflicts with the currently loaded module(s) 'compiler-rt/latest'
compiler-rt/2021.2.0(71):ERROR:102: Tcl command execution failed: conflict $mname64

tbb/2021.2.0(73):ERROR:150: Module 'tbb/2021.2.0' conflicts with the currently loaded module(s) 'tbb/latest'
tbb/2021.2.0(73):ERROR:102: Tcl command execution failed: conflict $mname64

 

Regards,

Yann

MRajesh_intel
Moderator
921 Views

Hi,


Can you please specify the OS version used.


Thanks

Rajesh.


MRajesh_intel
Moderator
899 Views

Hi,


Can you please provide the above details?


Regards

Rajesh.


yannj
Beginner
891 Views

Hi,

Sorry for the late answer.

I'm on

cat /etc/redhat-release
CentOS Linux release 7.6.1810 (Core)

Regards,

Yann

MRajesh_intel
Moderator
880 Views

Hi,


We currently do not support CentOS 7.x


Please visit the below link for the system requirements.

https://software.intel.com/content/www/us/en/develop/articles/oneapi-math-kernel-library-system-requ...


Regards

Rajesh.




MRajesh_intel
Moderator
865 Views

Hi,


We are closing this thread for now as we don't support older CentOS. If you require any additional assistance from Intel, please start a new thread. Any further interaction in this thread will be considered community only.


Have a Good day.


Regards

Rajesh


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