Intel® oneAPI Math Kernel Library
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pardiso factorization speed

may_ka
Beginner
873 Views

Hi,

 

when using pardiso on an upper triangular symmetric matrix of dimension 130,00 x 130,000 with 1,000,000 non-zeros it needs about 15 sec for a factorization, which is very slow compared to cholmod(suitesparse) 0.3 sec.

 

Further on large matrices, say >1,000,000 x >1,000,000 pardiso is so unbearable slow that it becomes unusable, whereas cholmod(suitesparse) can easily cope with the problem.

 

Is there any way to speed up pardiso? I figured that it gets stuck at the analysis stage.

 

I am using oneapi version 2021.2.0 on linux, kernel version 5.16.

 

Thanks

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12 Replies
Gennady_F_Intel
Moderator
845 Views

The only way to speed up the reordering stage is by trying the OpenMP version of Metis (iparm[1]=3).

wrt to factorization performance against cholmod -- here make sense to share the case to check the behavior on our end.



may_ka
Beginner
835 Views

Hi,

I'll make an example.

 

Question is how I can get he matrix to Intel? My current best example matrix with 12M rows/columns and 500M elements needs 11GB on disk!

Gennady_F_Intel
Moderator
829 Views

You could upload the case anywhere ( google drive as an example) and give us the link by the private channel into this forum or directly via email ( Gennady.Fedorov@intel.com). And please add the driver which will write this matrix and run the solver with your parameters. It will essentially save the reproducing time.

-Gennady


may_ka
Beginner
816 Views

Hi,

 

I have emailed you a link for downloading an archive with matrix and driver.

 

The example also reproduces the observation from this thread https://community.intel.com/t5/Intel-oneAPI-Math-Kernel-Library/omp-warning-when-using-pardiso-and-m... 

 

Thanks for looking into this.

may_ka
Beginner
749 Views

Hi,

 

@Gennady_F_Intel wondering whether you had the time yet to look into the example provided?

 

I just installed oneapi 2022.0.2, and all the described problems remain, even the omp_nested warning from this thread 

Gennady_F_Intel
Moderator
706 Views

I am very sorry, Karl. I missed this thread and will do it asap.


may_ka
Beginner
624 Views

Hi Gennady,

 

I responded to your email some time ago pointing out that there must be an issue at your side reading the sparse array in binary.

 

Is there any update on this?

 

Best

Gennady_F_Intel
Moderator
612 Views

Hi Karl,

I responded by email to you on this matter.

The reordering performance problem has been reproduced on our end and escalated against the Sparse Solver Team.

We will keep this thread updated in case of any updates.

thanks,

Gennady


may_ka
Beginner
552 Views

Hi,

 

I had contacted the pardiso team about this problem as well, and according to their test and a test library they provided to me the problem does not affect the most recent pardiso version.

 

Does Intel have any plans for updating pardiso?

 

Thanks.

Khang_N_Intel
Employee
450 Views

Hi Karl,


I just want to let you know that the team is still investigating this issue.

We will let you know once we find out the issue.


Best regards,

Khang


Khang_N_Intel
Employee
332 Views

Hi Karl,


The issue has already been escalated to the mkl team.

Due to many changes, we might not have a solution at this time.

I will consult with the mkl team and will get back to with an estimated timelione.


Best regards,

Khang


Khang_N_Intel
Employee
290 Views

Hi Karl,


The latest I received from the mkl team is that the solution might not be available until, to the earliest, the second half of next year.


Best regards,

Khang


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