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Ye_C_

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02-04-2016
03:25 PM

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question about some parameter of scalapack routine

I have some questions about the use of scalapack.

For example, I want to use the eigensolver pdsyev to obtain all the eigenvalues and eigenvectors.

By now, I can hardly understand the dimensions of parameter a (and also z). In the MKL manual, the dimensions of local matrix a should be "lld_a*LOCc(ja+n-1)", but I do not understand what is LOCc(ja+n-1).

ja is the column index in the global matrix A indicating the first column of the submatrix a, and n is the number of the column of global matrix A.

Would you please tell me what is LOCc(n), when ja = 1?

Another question is wether the memory layout of the eigenvectors can be set different with the matrix A?

For example, I have a 8*8 matrix and 2*2 process gird, and I want each process hold some whole eigenvectors rather than just parts of some eigenvectors. Is it possible?

Thanks for your help!

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Ying_H_Intel

Employee

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02-04-2016
05:01 PM

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Hi Ye.C

You may find some c example in MKL install directory.

and there are some scalapack usage discussed in the forum, you can refer to them too.

For example, one C dgesv sample in

https://software.intel.com/en-us/forums/intel-math-kernel-library/topic/536962

and sample code in

https://software.intel.com/en-us/forums/intel-math-kernel-library/topic/558359

Best Regards,

Ying

Ye_C_

Beginner

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02-04-2016
06:40 PM

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Hi Ying,

Thank you for your reply.

I can understand the LOCc now.

There is an another question about the distribution of the solved eigenvectors.

For example, I have a 4*4 trivial identical matrix:

1 0 0 0

0 1 0 0

0 0 1 0

0 0 0 1

and a 2*2 process grid, say:

0 1

2 3

Is it possible to let each process hold a eigenvector?

In other words, the distribution layout of the matrix and the eigenvector is different.

Yours respectfully.

Ying H (Intel) wrote:

Hi Ye.C

You may find some c example in MKL install directory.

and there are some scalapack usage discussed in the forum, you can refer to them too.

For example, one C dgesv sample in

https://software.intel.com/en-us/forums/intel-math-kernel-library/topic/536962

and sample code in

https://software.intel.com/en-us/forums/intel-math-kernel-library/topic/558359

Best Regards,

Ying

Ying_H_Intel

Employee

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02-14-2016
08:06 PM

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Hi Ye,

The scalapack use 2d block cyclic distribution, like below, with 2x3 grid, blocksize=1, usually, we use numroc to calculate the locC ,

` ` `locR = numroc_(&matrix_size, &block, &myrow, &izero, &nprow);` |

` ` `locC = numroc_(&matrix_size, &block, &mycol, &izero, &npcol);` |

The mkl manual has such discription:

number of rows and columns of a global dense matrix that a particular process in a grid receives after

data distributing is denoted by LOCr() and LOCc(), respectively. To compute these numbers, you can use

the ScaLAPACK tool routine numroc.

"lld_a, Leading dimension of the local matrix A..

So the lld_axLocc() is local matrix on each grid.

for example "row major", on grid(0,0) = they are 4x4.

on grid(0,2) = they are 4x2.

Regarding your question, Is it possible to let each process hold a eigenvector? Not sure if i understand right. But it is possible to get one process to hold one eigenvalue , for example, your have a 4*4 trivial identical matrix and 2x2 process grid. As eigen vector matrix was distributed as global matrix 2d block cyclic distribution, you may need send them back for complete eigen vector. Although it is possible if redesign the implement (focus on eigen vector on one process), but as i understand, current scalapack don't support this.

MKL manual explain the output z matrix as below:

Array, global size n*n, local size lld_z*LOCc(jz+n-1). If jobz = 'V',

then on normal exit the first m columns of z contain the orthonormal

eigenvectors of the matrix corresponding to the selected eigenvalues.

If jobz = 'N', then z is not referenced.

Best Regards,

Ying

and the figure in https://software.intel.com/en-us/forums/intel-math-kernel-library/topic/562742, blocksize=2, process grid 2x2, matrix size =9x9

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