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Hi,
Yes, the wake# signal is not available. The Cyclone V hard IP for PCie is not support the low power state like L0s and L1, and the WAKE# signal is useful in L2 state. You can refer to table 4-6 in the following link:
https://www.intel.com/content/dam/www/programmable/us/en/pdfs/literature/ug/archives/ug-01110-1.2.pdf
Regards -SK
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