Caffe build error

[idata]

Hello,

I am trying to install latest MvNC_Toolkit-1.07.10.tgz on my Ubuntu 16.04 laptop. I already had Python (Anaconda) and OpenCV installed. I run setup.sh and get a linking error while building Caffe.

What do you think is the problem?

[ 77%] Building CXX object tools/CMakeFiles/caffe.bin.dir/caffe.cpp.o [ 77%] Linking CXX executable caffe /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFReadDirectory@LIBTIFF_4.0' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyClass_Type' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyString_FromString' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyFile_AsFile' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyString_Size' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFWriteEncodedStrip@LIBTIFF_4.0' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyString_FromStringAndSize' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFIsTiled@LIBTIFF_4.0' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'Py_InitModule4_64' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFOpen@LIBTIFF_4.0' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyString_InternFromString' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyInt_Type' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyInt_FromLong' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyUnicodeUCS4_AsWideChar' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyInt_AsLong' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyFile_FromString' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFReadEncodedStrip@LIBTIFF_4.0' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFSetField@LIBTIFF_4.0' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFWriteScanline@LIBTIFF_4.0' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyNumber_Divide' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFGetField@LIBTIFF_4.0' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFScanlineSize@LIBTIFF_4.0' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFNumberOfStrips@LIBTIFF_4.0' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyString_Type' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFSetWarningHandler@LIBTIFF_4.0' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyString_AsString' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFSetErrorHandler@LIBTIFF_4.0' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFReadEncodedTile@LIBTIFF_4.0' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFReadRGBATile@LIBTIFF_4.0' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyString_FromFormat' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFClose@LIBTIFF_4.0' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyUnicodeUCS4_FromEncodedObject' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFRGBAImageOK@LIBTIFF_4.0' /usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libboost_python.so: undefined reference to 'PyNumber_InPlaceDivide' /usr/local/lib/libopencv_imgcodecs.so.3.3.0: undefined reference to 'TIFFReadRGBAStrip@LIBTIFF_4.0' collect2: error: ld returned 1 exit status tools/CMakeFiles/caffe.bin.dir/build.make:131: recipe for target 'tools/caffe' failed make[2]: *** [tools/caffe] Error 1 CMakeFiles/Makefile2:505: recipe for target 'tools/CMakeFiles/caffe.bin.dir/all' failed make[1]: *** [tools/CMakeFiles/caffe.bin.dir/all] Error 2 Makefile:127: recipe for target 'all' failed make: *** [all] Error 2 Installation failed. Error on line 129

[idata]

here is the beginning of the output. Since it's too big I can't post at once.

Downloading Caffe... Cloning into 'caffe'... Compiling Caffe... Switched to a new branch 'fathom_branch' -- The C compiler identification is GNU 5.4.0 -- The CXX compiler identification is GNU 5.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.58.0 -- Found the following Boost libraries: -- system -- thread -- filesystem -- chrono -- date_time -- atomic -- Found GFlags: /usr/include -- Found gflags (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libgflags.so) -- Found Glog: /usr/include -- Found glog (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libglog.so) -- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so -- Found PROTOBUF Compiler: /usr/bin/protoc -- Found HDF5: /home/mstf/anaconda3/lib/libhdf5_hl.so;/home/mstf/anaconda3/lib/libhdf5.so;/home/mstf/anaconda3/lib/libhdf5_hl.so;/home/mstf/anaconda3/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/mstf/anaconda3/lib/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.8.17") -- Found LMDB: /usr/include -- Found lmdb (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/liblmdb.so) -- Found LevelDB: /usr/include -- Found LevelDB (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libleveldb.so) -- Found Snappy: /usr/include -- Found Snappy (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libsnappy.so) -- -- CUDA is disabled. Building without it... -- OpenCV found (/usr/local/share/OpenCV) -- Found Atlas: /usr/include -- Found Atlas (include: /usr/include library: /usr/lib/libatlas.so lapack: /usr/lib/liblapack.so -- Found PythonInterp: /home/mstf/anaconda3/bin/python3 (found suitable version "3.6", minimum required is "3.0") -- Found PythonLibs: /home/mstf/anaconda3/lib/libpython3.6m.so (found suitable version "3.6.0", minimum required is "3.0") -- Found NumPy: /home/mstf/anaconda3/lib/python3.6/site-packages/numpy/core/include (found suitable version "1.11.3", minimum required is "1.7.1") -- NumPy ver. 1.11.3 found (include: /home/mstf/anaconda3/lib/python3.6/site-packages/numpy/core/include) -- Could NOT find Boost -- Could NOT find Boost -- Could NOT find Boost -- Boost version: 1.58.0 -- Found the following Boost libraries: -- python -- Found Doxygen: /usr/bin/doxygen (found version "1.8.11") -- Detected Doxygen OUTPUT_DIRECTORY: ./doxygen/ -- Found Git: /usr/bin/git (found version "2.7.4") -- -- ******************* Caffe Configuration Summary ******************* -- General: -- Version : 1.0.0 -- Git : 1.0-dirty -- System : Linux -- C++ compiler : /usr/bin/c++ -- Release CXX flags : -O3 -DNDEBUG -fPIC -Wall -Wno-sign-compare -Wno-uninitialized -- Debug CXX flags : -g -fPIC -Wall -Wno-sign-compare -Wno-uninitialized -- Build type : Release -- -- BUILD_SHARED_LIBS : ON -- BUILD_python : ON -- BUILD_matlab : OFF -- BUILD_docs : ON -- CPU_ONLY : ON -- USE_OPENCV : ON -- USE_LEVELDB : ON -- USE_LMDB : ON -- USE_NCCL : OFF -- ALLOW_LMDB_NOLOCK : OFF -- -- Dependencies: -- BLAS : Yes (Atlas) -- Boost : Yes (ver. 1.58) -- glog : Yes -- gflags : Yes -- protobuf : Yes (ver. 2.6.1) -- lmdb : Yes (ver. 0.9.17) -- LevelDB : Yes (ver. 1.18) -- Snappy : Yes (ver. 1.1.3) -- OpenCV : Yes (ver. 3.3.0) -- CUDA : No -- -- Python: -- Interpreter : /home/mstf/anaconda3/bin/python3 (ver. 3.6) -- Libraries : /home/mstf/anaconda3/lib/libpython3.6m.so (ver 3.6.0) -- NumPy : /home/mstf/anaconda3/lib/python3.6/site-packages/numpy/core/include (ver 1.11.3) -- -- Documentaion: -- Doxygen : /usr/bin/doxygen (1.8.11) -- config_file : /opt/movidius/caffe/.Doxyfile -- -- Install: -- Install path : /opt/movidius/caffe/build/install -- -- Configuring done

[idata]

``` CMake Warning (dev) in src/caffe/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "caffe" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: proto;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_thread.so;/usr/lib/x86_64-linux-gnu/libboost_filesystem.so;/usr/lib/x86_64-linux-gnu/libboost_chrono.so;/usr/lib/x86_64-linux-gnu/libboost_date_time.so;/usr/lib/x86_64-linux-gnu/libboost_atomic.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libglog.so;/usr/lib/x86_64-linux-gnu/libgflags.so;$<$<NOT:$<CONFIG:DEBUG>>:/usr/lib/x86_64-linux-gnu/libprotobuf.so>;$<$<CONFIG:DEBUG>:/usr/lib/x86_64-linux-gnu/libprotobuf.so>;-lpthread;/home/mstf/anaconda3/lib/libhdf5_hl.so;/home/mstf/anaconda3/lib/libhdf5.so;/home/mstf/anaconda3/lib/libhdf5_hl.so;/home/mstf/anaconda3/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/mstf/anaconda3/lib/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/home/mstf/anaconda3/lib/libhdf5_hl.so;/home/mstf/anaconda3/lib/libhdf5.so;/home/mstf/anaconda3/lib/libhdf5_hl.so;/home/mstf/anaconda3/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/mstf/anaconda3/lib/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/liblmdb.so;/usr/lib/x86_64-linux-gnu/libleveldb.so;opencv_core;opencv_highgui;opencv_imgproc;opencv_imgcodecs;/usr/lib/liblapack.so;/usr/lib/libcblas.so;/usr/lib/libatlas.so;/usr/lib/x86_64-linux-gnu/libboost_python.so LINK_INTERFACE_LIBRARIES: proto;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_thread.so;/usr/lib/x86_64-linux-gnu/libboost_filesystem.so;/usr/lib/x86_64-linux-gnu/libboost_chrono.so;/usr/lib/x86_64-linux-gnu/libboost_date_time.so;/usr/lib/x86_64-linux-gnu/libboost_atomic.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libglog.so;/usr/lib/x86_64-linux-gnu/libgflags.so;/usr/lib/x86_64-linux-gnu/libprotobuf.so;-lpthread;/home/mstf/anaconda3/lib/libhdf5_hl.so;/home/mstf/anaconda3/lib/libhdf5.so;/home/mstf/anaconda3/lib/libhdf5_hl.so;/home/mstf/anaconda3/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/mstf/anaconda3/lib/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/home/mstf/anaconda3/lib/libhdf5_hl.so;/home/mstf/anaconda3/lib/libhdf5.so;/home/mstf/anaconda3/lib/libhdf5_hl.so;/home/mstf/anaconda3/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/mstf/anaconda3/lib/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/liblmdb.so;/usr/lib/x86_64-linux-gnu/libleveldb.so;opencv_core;opencv_highgui;opencv_imgproc;opencv_imgcodecs;/usr/lib/liblapack.so;/usr/lib/libcblas.so;/usr/lib/libatlas.so;/usr/lib/x86_64-linux-gnu/libboost_python.so ```

[idata]

@mstfldmr Can you provide more details about your system? Are you using 64 bit Ubuntu 16.04? Are you using a physical machine or a virtual machine?

[idata]

@Tome_at_Intel it's a physical machine, a Lenovo Yoga 900 laptop with Core-i7-6500u CPU and 8GB RAM. I'm running 64bits Ubuntu 16.04.

[idata]

@Tome_at_Intel I already had OpenCV and Anaconda installed. Uninstalling OpenCV didn't help.

After removing Anaconda, it worked!

[idata]

@mstfldmr Glad to hear it's working! :)