Possible to call verilog code from a c program running on a soft processor on an FPGA

[Altera_Forum]

I have a soft NIOS II processor instantiated on an Altera FPGA. I have 4 JTAG pins connected from the FPGA to a FTDI chip (lets call them A1, A2, A3, A4). I have the JTAG pins from 2 MCUs connected to the FPGA also (lets call them B1, B2, B3, B4 and C1, C2, C3, C4).  

 In software running on the NIOS I want to be able to select which two sets of pins I want to connect (i.e. A to B or A to C).  You have to do pins assignments in verilog though. Is there a way to call a block of verilog code from a c program running on the NIOS?

[Altera_Forum]

FPGA JTAG pins are dedicated resources with fixed location and can't be selected by configuration or user logic. 

 FPGA logic blocks aren't "called", neither from other FPGA modules nor a soft processor. The logic operation can be however made conditional, depending on a register written by the soft processor.